Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes ATF1
  • Mouse genes Atf1
  • Rat genes Atf1
  • Zfish genes atf1
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Atf1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003677	DNA binding	Atf1	IDA		Mouse	PMID:11354513
Molecular Function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific	ATF1	IDA		Human	PMID:1655749
Molecular Function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	Atf1	IDA		Rat	PMID:14576830|RGD:1600488
Molecular Function	GO:0042802	identical protein binding	ATF1	IPI	UniProtKB:P18846	Human	PMID:20102225
Molecular Function	GO:0042802	identical protein binding	ATF1	IPI	UniProtKB:P18846	Human	PMID:21045134
Molecular Function	GO:0005515	protein binding	ATF1	IPI	UniProtKB:P03259-2	Human	PMID:10722738
Molecular Function	GO:0005515	protein binding	ATF1	IPI	UniProtKB:P0C746	Human	PMID:20102225
Molecular Function	GO:0005515	protein binding	ATF1	IPI	UniProtKB:P16220	Human	PMID:20102225
Molecular Function	GO:0005515	protein binding	ATF1	IPI	UniProtKB:Q16649	Human	PMID:20102225
Molecular Function	GO:0005515	protein binding	ATF1	IPI	UniProtKB:Q9DGW5	Human	PMID:20102225
Molecular Function	GO:0005515	protein binding	ATF1	IPI	UniProtKB:P03372	Human	PMID:21217774
Molecular Function	GO:0005515	protein binding	ATF1	IPI	UniProtKB:O95644	Human	PMID:25609649
Molecular Function	GO:0005515	protein binding	ATF1	IPI	UniProtKB:P05412	Human	PMID:25609649
Molecular Function	GO:0005515	protein binding	ATF1	IPI	UniProtKB:P16220	Human	PMID:25609649
Molecular Function	GO:0005515	protein binding	ATF1	IPI	UniProtKB:Q16649	Human	PMID:28514442
Molecular Function	GO:0005515	protein binding	ATF1	IPI	UniProtKB:A0A0C5B5G6	Human	PMID:29983246
Molecular Function	GO:0005515	protein binding	ATF1	IPI	UniProtKB:P03372	Human	PMID:31527615
Molecular Function	GO:0044877	protein-containing complex binding	Atf1	IDA		Rat	PMID:16373341|RGD:2316017
Molecular Function	GO:0044877	protein-containing complex binding	Atf1	IPI	RGD:620218	Rat	PMID:9489722|RGD:2316091
Molecular Function	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding	ATF1	IDA		Human	PMID:1655749
Molecular Function	GO:0043565	sequence-specific DNA binding	Atf1	IDA		Rat	PMID:15084519|RGD:2312278
Cellular Component	GO:1990590	ATF1-ATF4 transcription factor complex	ATF1	IDA		Human	PMID:12871976
Cellular Component	GO:1990590	ATF1-ATF4 transcription factor complex	Atf1	IDA		Mouse	MGI:MGI:5613480|PMID:12871976
Cellular Component	GO:0005654	nucleoplasm	ATF1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005634	nucleus	ATF1	IDA		Human	PMID:8798441
Cellular Component	GO:0005634	nucleus	Atf1	IDA		Rat	PMID:10559391|RGD:2313660
Cellular Component	GO:0090575	RNA polymerase II transcription regulator complex	ATF1	IPI		Human	PMID:20102225
Cellular Component	GO:0090575	RNA polymerase II transcription regulator complex	Atf1	IPI		Mouse	MGI:MGI:5613480|PMID:12871976
Cellular Component	GO:0005667	transcription regulator complex	Atf1	IDA		Mouse	PMID:11354513
Cellular Component	GO:0005667	transcription regulator complex	Atf1	IDA		Rat	PMID:14576830|RGD:1600488
Biological Process	GO:0019933	cAMP-mediated signaling	ATF1	IDA		Human	PMID:25644539
Biological Process	GO:0045740	positive regulation of DNA replication	Atf1	IMP		Rat	PMID:11925444|RGD:625519
Biological Process	GO:0010976	positive regulation of neuron projection development	Atf1	IMP		Rat	PMID:9489722|RGD:2316091
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	ATF1	IDA		Human	PMID:1655749
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	Atf1	IDA		Mouse	MGI:MGI:5613480|PMID:12871976
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	Atf1	IMP		Rat	PMID:17822438|RGD:2316014
Biological Process	GO:0065003	protein-containing complex assembly	Atf1	IMP		Rat	PMID:10770487|RGD:2316075
Biological Process	GO:0006357	regulation of transcription by RNA polymerase II	ATF1	IDA		Human	PMID:1655749
Biological Process	GO:0032025	response to cobalt ion	Atf1	IEP		Rat	PMID:10559391|RGD:2313660
Biological Process	GO:0010035	response to inorganic substance	Atf1	IMP		Mouse	PMID:25644539
Biological Process	GO:0014070	response to organic cyclic compound	Atf1	IEP		Rat	PMID:10683356|RGD:2316080
Biological Process	GO:0014074	response to purine-containing compound	ATF1	IDA		Human	PMID:25644539

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern