Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes ATXN2L
  • Mouse genes Atxn2l
  • Rat genes Atxn2l
  • Zfish genes atxn2l
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Atxn2l

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0045296	cadherin binding	ATXN2L	HDA		Human	PMID:25468996
Molecular Function	GO:0005515	protein binding	ATXN2L	IPI	UniProtKB:P19235	Human	PMID:11784712
Molecular Function	GO:0005515	protein binding	ATXN2L	IPI	UniProtKB:Q13283	Human	PMID:19615732
Molecular Function	GO:0005515	protein binding	ATXN2L	IPI	UniProtKB:Q13283	Human	PMID:23209657
Molecular Function	GO:0005515	protein binding	ATXN2L	IPI	UniProtKB:Q13283	Human	PMID:24981860
Molecular Function	GO:0003723	RNA binding	ATXN2L	HDA		Human	PMID:22658674
Molecular Function	GO:0003723	RNA binding	ATXN2L	HDA		Human	PMID:22681889
Cellular Component	GO:0010494	cytoplasmic stress granule	ATXN2L	IDA		Human	PMID:23209657
Cellular Component	GO:0005829	cytosol	ATXN2L	IDA		Human	GO_REF:0000052
Cellular Component	GO:0016020	membrane	ATXN2L	IDA		Human	PMID:11784712
Cellular Component	GO:0016020	membrane	ATXN2L	HDA		Human	PMID:19946888
Cellular Component	GO:0016607	nuclear speck	ATXN2L	IDA		Human	PMID:23209657
Biological Process	GO:0016071	mRNA metabolic process	ATXN2L	IMP		Human	PMID:23209657

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern