Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes BARX2
  • Mouse genes Barx2
  • Rat genes Barx2
  • Zfish genes barx2
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Barx2

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003682	chromatin binding	Barx2	IDA		Mouse	PMID:15728386
Molecular Function	GO:0003682	chromatin binding	Barx2	IDA		Mouse	PMID:15800003
Molecular Function	GO:0003677	DNA binding	BARX2	IDA		Human	PMID:10854790
Molecular Function	GO:0003677	DNA binding	Barx2	IGI	MGI:MGI:106658	Mouse	PMID:11278942
Molecular Function	GO:0003677	DNA binding	Barx2	IDA		Mouse	PMID:15728386
Molecular Function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific	BARX2	IMP		Human	PMID:14744868
Molecular Function	GO:0003700	DNA-binding transcription factor activity	Barx2	IDA		Mouse	PMID:15800003
Molecular Function	GO:0005515	protein binding	BARX2	IPI	UniProtKB:Q13643	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	BARX2	IPI	UniProtKB:Q14192	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	Barx2	IPI	PR:Q62440	Mouse	PMID:15728386
Molecular Function	GO:0005515	protein binding	Barx2	IPI	PR:Q9QXE7	Mouse	PMID:15728386
Molecular Function	GO:0005515	protein binding	Barx2	IPI	PR:Q9JM73	Mouse	PMID:11278942
Molecular Function	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding	BARX2	IMP		Human	PMID:14744868
Molecular Function	GO:0043565	sequence-specific DNA binding	Barx2	IDA		Mouse	PMID:15800003
Molecular Function	GO:1990837	sequence-specific double-stranded DNA binding	BARX2	IDA		Human	PMID:28473536
Cellular Component	GO:0015629	actin cytoskeleton	BARX2	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005829	cytosol	BARX2	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005794	Golgi apparatus	BARX2	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005654	nucleoplasm	BARX2	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005667	transcription regulator complex	Barx2	IDA		Mouse	PMID:15728386
Biological Process	GO:0001502	cartilage condensation	Barx2	IMP		Mouse	PMID:15800003
Biological Process	GO:0001502	cartilage condensation	Barx2	IDA		Mouse	PMID:15800003
Biological Process	GO:0042637	catagen	Barx2	IMP	MGI:MGI:3574438	Mouse	PMID:15728386
Biological Process	GO:0006351	DNA-templated transcription	Barx2	IDA		Mouse	MGI:MGI:3578585|PMID:15800003
Biological Process	GO:0014902	myotube differentiation	Barx2	IMP		Mouse	PMID:12486129
Biological Process	GO:0000122	negative regulation of transcription by RNA polymerase II	Barx2	IDA		Mouse	PMID:15728386
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	BARX2	IMP		Human	PMID:14744868
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	Barx2	IDA		Mouse	PMID:15800003
Biological Process	GO:0006355	regulation of DNA-templated transcription	Barx2	IDA		Mouse	MGI:MGI:3578585|PMID:15800003
Biological Process	GO:0035914	skeletal muscle cell differentiation	Barx2	IMP		Mouse	PMID:12486129
Biological Process	GO:0006366	transcription by RNA polymerase II	Barx2	IDA		Mouse	PMID:15800003

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern