Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes BASP1
  • Mouse genes Basp1
  • Rat genes Basp1
  • Zfish genes basp1
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Basp1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	BASP1	IPI	UniProtKB:Q99732	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	Basp1	IPI	UniProtKB:P22561	Mouse	MGI:MGI:4418604|PMID:19050011
Molecular Function	GO:0019904	protein domain specific binding	BASP1	IPI	UniProtKB:P19544	Human	PMID:14701728
Molecular Function	GO:0000976	transcription cis-regulatory region binding	Basp1	IDA		Mouse	MGI:MGI:4418604|PMID:19050011
Molecular Function	GO:0003714	transcription corepressor activity	BASP1	IMP		Human	PMID:14701728
Cellular Component	GO:0030054	cell junction	BASP1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0000785	chromatin	Basp1	IDA		Mouse	MGI:MGI:4418604|PMID:19050011
Cellular Component	GO:0005737	cytoplasm	BASP1	IDA		Human	PMID:14701728
Cellular Component	GO:0005737	cytoplasm	Basp1	IDA		Mouse	MGI:MGI:4419083|PMID:14701728
Cellular Component	GO:0005737	cytoplasm	Basp1	IDA		Rat	PMID:19683798|RGD:8554397
Cellular Component	GO:0070062	extracellular exosome	BASP1	HDA		Human	PMID:19056867
Cellular Component	GO:0070062	extracellular exosome	BASP1	HDA		Human	PMID:23533145
Cellular Component	GO:0016363	nuclear matrix	BASP1	IDA		Human	PMID:19050011
Cellular Component	GO:0016607	nuclear speck	Basp1	IDA		Mouse	MGI:MGI:4418604|PMID:19050011
Cellular Component	GO:0005634	nucleus	BASP1	IDA		Human	PMID:14701728
Cellular Component	GO:0005634	nucleus	Basp1	IDA		Mouse	MGI:MGI:4419083|PMID:14701728
Cellular Component	GO:0005886	plasma membrane	BASP1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0016605	PML body	BASP1	IDA		Human	PMID:19050011
Cellular Component	GO:0031982	vesicle	BASP1	HDA		Human	PMID:19190083
Biological Process	GO:0045892	negative regulation of DNA-templated transcription	BASP1	IMP		Human	PMID:14701728
Biological Process	GO:0045892	negative regulation of DNA-templated transcription	BASP1	IDA		Human	PMID:19050011
Biological Process	GO:0072112	podocyte differentiation	Basp1	IDA		Mouse	MGI:MGI:4418604|PMID:19050011
Biological Process	GO:0045766	positive regulation of angiogenesis	basp1	IMP	ZFIN:ZDB-GENO-221130-6	Zfish	PMID:33899275
Biological Process	GO:0021762	substantia nigra development	BASP1	HEP		Human	PMID:22926577

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern