Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes C1D
  • Mouse genes C1d
  • Rat genes C1d
  • Zfish genes c1d
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set C1d

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003677	DNA binding	C1d	IDA		Mouse	PMID:9469821
Molecular Function	GO:0016922	nuclear receptor binding	C1d	IDA		Mouse	PMID:9405624
Molecular Function	GO:0005515	protein binding	C1D	IPI	UniProtKB:Q01780	Human	PMID:17412707
Molecular Function	GO:0005515	protein binding	C1D	IPI	UniProtKB:Q5VWK5	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	C1D	IPI	UniProtKB:O15499	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	C1D	IPI	UniProtKB:P51687	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	C1D	IPI	UniProtKB:Q8N5A5-2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	C1D	IPI	UniProtKB:Q9Y371	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	C1D	IPI	UniProtKB:O00291	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	C1D	IPI	UniProtKB:O76024	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	C1D	IPI	UniProtKB:P13473-2	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	C1D	IPI	UniProtKB:P42858	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	C1D	IPI	UniProtKB:P55212	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	C1D	IPI	UniProtKB:P62826	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	C1D	IPI	UniProtKB:Q9Y371	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	C1d	IPI	PR:P37242	Mouse	PMID:9405624
Molecular Function	GO:0003723	RNA binding	C1D	IDA		Human	PMID:17412707
Molecular Function	GO:0003714	transcription corepressor activity	C1d	IDA		Mouse	PMID:9405624
Cellular Component	GO:0005730	nucleolus	C1D	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005654	nucleoplasm	C1D	IDA		Human	GO_REF:0000052
Cellular Component	GO:0017053	transcription repressor complex	C1d	IDA		Mouse	PMID:9405624
Biological Process	GO:0000460	maturation of 5.8S rRNA	C1D	IMP		Human	PMID:17412707
Biological Process	GO:0045892	negative regulation of DNA-templated transcription	C1d	IDA		Mouse	PMID:9405624

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern