Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes CALY
  • Mouse genes Caly
  • Rat genes Caly
  • Zfish genes caly
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Caly

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0032051	clathrin light chain binding	CALY	IDA		Human	PMID:16595675
Molecular Function	GO:0005515	protein binding	CALY	IPI	UniProtKB:P09496	Human	PMID:16595675
Molecular Function	GO:0044877	protein-containing complex binding	Caly	IPI	RGD:2518|RGD:68424	Rat	PMID:22843680|RGD:7248597
Cellular Component	GO:0030424	axon	Caly	IDA		Rat	PMID:29949458|RGD:15097509
Cellular Component	GO:0031410	cytoplasmic vesicle	CALY	IDA		Human	PMID:14534309
Cellular Component	GO:0031410	cytoplasmic vesicle	CALY	IDA		Human	PMID:16595675
Cellular Component	GO:0098978	glutamatergic synapse	Caly	IDA		Mouse	PMID:19120439
Cellular Component	GO:0098978	glutamatergic synapse	Caly	IEP		Mouse	PMID:19120439
Cellular Component	GO:0098978	glutamatergic synapse	Caly	IMP		Mouse	PMID:19120439
Cellular Component	GO:0005886	plasma membrane	CALY	IDA		Human	PMID:14534309
Cellular Component	GO:0098843	postsynaptic endocytic zone	CALY	IDA		Human	PMID:16595675
Cellular Component	GO:0098843	postsynaptic endocytic zone	CALY	IMP		Human	PMID:16595675
Biological Process	GO:0008089	anterograde axonal transport	Caly	IMP		Rat	PMID:29949458|RGD:15097509
Biological Process	GO:0048268	clathrin coat assembly	CALY	IDA		Human	PMID:16595675
Biological Process	GO:1905445	positive regulation of clathrin coat assembly	Caly	IDA		Rat	PMID:16595675|RGD:11056251
Biological Process	GO:0045807	positive regulation of endocytosis	CALY	IMP		Human	PMID:16595675
Biological Process	GO:2001019	positive regulation of retrograde axon cargo transport	Caly	IMP		Rat	PMID:29949458|RGD:15097509
Biological Process	GO:0098884	postsynaptic neurotransmitter receptor internalization	Caly	IDA		Mouse	PMID:19120439
Biological Process	GO:0098884	postsynaptic neurotransmitter receptor internalization	Caly	IMP		Mouse	PMID:19120439
Biological Process	GO:0098884	postsynaptic neurotransmitter receptor internalization	Caly	IEP		Mouse	PMID:19120439

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern