Comparative GO Graph (mouse, human, rat)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes CAPN6
  • Mouse genes Capn6
  • Rat genes Capn6
  • Zfish genes
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Capn6

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0008017	microtubule binding	Capn6	IDA		Mouse	MGI:MGI:3709943|PMID:17210638
Molecular Function	GO:0005515	protein binding	CAPN6	IPI	UniProtKB:O43829	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	Capn6	IPI	UniProtKB:Q60875	Mouse	MGI:MGI:5009755|PMID:21406564
Cellular Component	GO:0005874	microtubule	Capn6	IDA		Mouse	MGI:MGI:3709943|PMID:17210638
Cellular Component	GO:0048471	perinuclear region of cytoplasm	CAPN6	IDA		Human	PMID:17210638
Cellular Component	GO:0005876	spindle microtubule	CAPN6	IDA		Human	PMID:17210638
Biological Process	GO:0001578	microtubule bundle formation	Capn6	IMP		Mouse	MGI:MGI:3709943|PMID:17210638
Biological Process	GO:0051493	regulation of cytoskeleton organization	Capn6	IMP		Mouse	MGI:MGI:3709943|PMID:17210638

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern