Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes CARF
  • Mouse genes Carf
  • Rat genes Carf
  • Zfish genes carf
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Carf

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003677	DNA binding	CARF	IDA		Human	PMID:11832226
Molecular Function	GO:0003677	DNA binding	Carf	IDA		Rat	PMID:11832226|RGD:8553337
Molecular Function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific	CARF	IDA		Human	PMID:11832226
Molecular Function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific	Carf	IDA		Mouse	MGI:MGI:2179876|PMID:11832226
Molecular Function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific	Carf	IMP		Mouse	MGI:MGI:2179876|PMID:11832226
Molecular Function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific	Carf	IDA		Rat	PMID:11832226|RGD:8553337
Molecular Function	GO:0005515	protein binding	CARF	IPI	UniProtKB:Q53EZ4	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	CARF	IPI	UniProtKB:Q8NAP3	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	CARF	IPI	UniProtKB:Q9BUZ4	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	CARF	IPI	UniProtKB:Q9NR30	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	CARF	IPI	UniProtKB:Q9NSE2	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	Carf	IPI	PR:P51480	Mouse	PMID:12154087
Molecular Function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Carf	IDA		Mouse	MGI:MGI:2179876|PMID:11832226
Cellular Component	GO:0001652	granular component	Carf	IDA		Mouse	PMID:12154087
Cellular Component	GO:0005634	nucleus	Carf	IDA		Mouse	MGI:MGI:2179876|PMID:11832226
Cellular Component	GO:0005634	nucleus	Carf	IDA		Rat	PMID:11832226|RGD:8553337
Biological Process	GO:0071277	cellular response to calcium ion	CARF	IDA		Human	PMID:11832226
Biological Process	GO:0071277	cellular response to calcium ion	CARF	IDA		Human	PMID:22174809
Biological Process	GO:0071277	cellular response to calcium ion	Carf	IDA		Rat	PMID:11832226|RGD:8553337
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	Carf	IMP		Mouse	MGI:MGI:2179876|PMID:11832226
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	Carf	IDA		Mouse	MGI:MGI:2179876|PMID:11832226
Biological Process	GO:0051090	regulation of DNA-binding transcription factor activity	Carf	IGI	MGI:MGI:104738	Mouse	PMID:12154087

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern