Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes CCDC39
  • Mouse genes Ccdc39
  • Rat genes Ccdc39
  • Zfish genes ccdc39
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Ccdc39

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Cellular Component	GO:0097729	9+2 motile cilium	Ccdc39	EXP		Mouse	PMID:29317443
Cellular Component	GO:0005930	axoneme	CCDC39	IDA		Human	PMID:21131972
Cellular Component	GO:0005930	axoneme	CCDC39	IDA		Human	PMID:21131974
Cellular Component	GO:0005930	axoneme	CCDC39	IDA		Human	PMID:26387594
Cellular Component	GO:0005929	cilium	CCDC39	IDA		Human	PMID:27120127
Cellular Component	GO:0005829	cytosol	Ccdc39	IDA		Mouse	PMID:29317443
Biological Process	GO:0070286	axonemal dynein complex assembly	CCDC39	IMP		Human	PMID:21131972
Biological Process	GO:0007420	brain development	Ccdc39	IMP	MGI:5056368,MGI:4364215	Mouse	PMID:29317443
Biological Process	GO:0007420	brain development	Ccdc39	IMP	MGI:5056368	Mouse	PMID:29317443
Biological Process	GO:0090660	cerebrospinal fluid circulation	Ccdc39	IMP	MGI:5056368	Mouse	PMID:21515572
Biological Process	GO:0090660	cerebrospinal fluid circulation	Ccdc39	IMP	MGI:5056368	Mouse	PMID:29317443
Biological Process	GO:0090660	cerebrospinal fluid circulation	Ccdc39	IMP	MGI:5056368,MGI:4364215	Mouse	PMID:29317443
Biological Process	GO:0090660	cerebrospinal fluid circulation	Ccdc39	IMP	MGI:5316786	Mouse	PMID:28289722
Biological Process	GO:0003341	cilium movement	CCDC39	IMP		Human	PMID:22499950
Biological Process	GO:0060285	cilium-dependent cell motility	CCDC39	IMP		Human	PMID:21131972
Biological Process	GO:0060285	cilium-dependent cell motility	ccdc39	IMP		Zfish	PMID:21131972|ZFIN:ZDB-PUB-110128-7
Biological Process	GO:0071907	determination of digestive tract left/right asymmetry	CCDC39	IMP		Human	PMID:22693285
Biological Process	GO:0007368	determination of left/right symmetry	Ccdc39	IMP	MGI:5316786	Mouse	PMID:28289722
Biological Process	GO:0007368	determination of left/right symmetry	Ccdc39	IMP		Mouse	PMID:25807483
Biological Process	GO:0007368	determination of left/right symmetry	ccdc39	IMP	ZFIN:ZDB-MRPHLNO-110606-1	Zfish	PMID:21131972
Biological Process	GO:0071910	determination of liver left/right asymmetry	CCDC39	IMP		Human	PMID:22693285
Biological Process	GO:0035469	determination of pancreatic left/right asymmetry	CCDC39	IMP		Human	PMID:22693285
Biological Process	GO:0060287	epithelial cilium movement involved in determination of left/right asymmetry	CCDC39	IMP		Human	PMID:21131972
Biological Process	GO:0060287	epithelial cilium movement involved in determination of left/right asymmetry	ccdc39	IMP		Zfish	PMID:21131972|ZFIN:ZDB-PUB-110128-7
Biological Process	GO:0003351	epithelial cilium movement involved in extracellular fluid movement	Ccdc39	IMP	MGI:5056368	Mouse	PMID:29317443
Biological Process	GO:0003351	epithelial cilium movement involved in extracellular fluid movement	Ccdc39	IMP	MGI:5316786	Mouse	PMID:28289722
Biological Process	GO:0061966	establishment of left/right asymmetry	Ccdc39	IMP	MGI:5056368	Mouse	PMID:29317443
Biological Process	GO:0051649	establishment of localization in cell	Ccdc39	IMP	MGI:5056368	Mouse	PMID:29317443
Biological Process	GO:0051649	establishment of localization in cell	Ccdc39	IMP	MGI:5316786	Mouse	PMID:28289722
Biological Process	GO:0030317	flagellated sperm motility	CCDC39	IMP		Human	PMID:23255504
Biological Process	GO:0007507	heart development	Ccdc39	IMP	MGI:5316786	Mouse	PMID:28289722
Biological Process	GO:0007507	heart development	Ccdc39	IMP		Mouse	PMID:25807483
Biological Process	GO:0001947	heart looping	CCDC39	IMP		Human	PMID:22693285
Biological Process	GO:0036159	inner dynein arm assembly	CCDC39	IMP		Human	PMID:23255504
Biological Process	GO:0036159	inner dynein arm assembly	Ccdc39	IMP	MGI:5056368	Mouse	PMID:29317443
Biological Process	GO:0030324	lung development	CCDC39	IMP		Human	PMID:22693285
Biological Process	GO:0044458	motile cilium assembly	CCDC39	IMP		Human	PMID:23255504
Biological Process	GO:0061512	protein localization to cilium	Ccdc39	IMP	MGI:5056368	Mouse	PMID:29317443
Biological Process	GO:0003356	regulation of cilium beat frequency	CCDC39	IMP		Human	PMID:23255504

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern