Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes CCDC40
  • Mouse genes Ccdc40
  • Rat genes Ccdc40
  • Zfish genes ccdc40
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Ccdc40

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Cellular Component	GO:0005930	axoneme	CCDC40	IDA		Human	PMID:23255504
Cellular Component	GO:0005929	cilium	CCDC40	IDA		Human	PMID:27120127
Cellular Component	GO:0005929	cilium	Ccdc40	IDA		Mouse	MGI:MGI:4936771|PMID:21131974
Cellular Component	GO:0005737	cytoplasm	Ccdc40	IDA		Mouse	MGI:MGI:4936771|PMID:21131974
Cellular Component	GO:0031514	motile cilium	Ccdc40	IDA		Mouse	PMID:26387594
Biological Process	GO:0070286	axonemal dynein complex assembly	CCDC40	IMP		Human	PMID:21131974
Biological Process	GO:0035082	axoneme assembly	Ccdc40	IMP	MGI:MGI:3662904	Mouse	PMID:26387594
Biological Process	GO:0035082	axoneme assembly	ccdc40	IMP	ZFIN:ZDB-GENO-980202-1298	Zfish	PMID:21131974
Biological Process	GO:0035082	axoneme assembly	ccdc40	IMP	ZFIN:ZDB-GENO-980202-1298	Zfish	PMID:17576052
Biological Process	GO:0060271	cilium assembly	ccdc40	IMP	ZFIN:ZDB-GENO-980202-1298	Zfish	PMID:17576052
Biological Process	GO:0060271	cilium assembly	ccdc40	IMP	ZFIN:ZDB-MRPHLNO-110125-2	Zfish	PMID:21131974
Biological Process	GO:0060271	cilium assembly	ccdc40	IMP	ZFIN:ZDB-MRPHLNO-110125-3	Zfish	PMID:21131974
Biological Process	GO:0003341	cilium movement	CCDC40	IMP		Human	PMID:22499950
Biological Process	GO:0003341	cilium movement	Ccdc40	IMP		Mouse	MGI:MGI:4936771|PMID:21131974
Biological Process	GO:0003341	cilium movement	ccdc40	IMP		Zfish	PMID:21131974|ZFIN:ZDB-PUB-101209-24
Biological Process	GO:0003341	cilium movement	ccdc40	IMP	ZFIN:ZDB-MRPHLNO-110125-2	Zfish	PMID:21131974
Biological Process	GO:0003341	cilium movement	ccdc40	IMP	ZFIN:ZDB-MRPHLNO-110125-3	Zfish	PMID:21131974
Biological Process	GO:0071907	determination of digestive tract left/right asymmetry	CCDC40	IMP		Human	PMID:22693285
Biological Process	GO:0007368	determination of left/right symmetry	Ccdc40	IGI	MGI:MGI:97359	Mouse	PMID:28182636
Biological Process	GO:0007368	determination of left/right symmetry	ccdc40	IMP	ZFIN:ZDB-GENO-980202-1298	Zfish	PMID:9334285
Biological Process	GO:0007368	determination of left/right symmetry	ccdc40	IMP	ZFIN:ZDB-GENO-980202-1298	Zfish	PMID:17576052
Biological Process	GO:0007368	determination of left/right symmetry	ccdc40	IMP	ZFIN:ZDB-GENO-980202-1298	Zfish	PMID:21131974
Biological Process	GO:0007368	determination of left/right symmetry	ccdc40	IMP	ZFIN:ZDB-MRPHLNO-110125-3	Zfish	PMID:21131974
Biological Process	GO:0007368	determination of left/right symmetry	ccdc40	IMP	ZFIN:ZDB-MRPHLNO-110125-2	Zfish	PMID:21131974
Biological Process	GO:0071910	determination of liver left/right asymmetry	CCDC40	IMP		Human	PMID:22693285
Biological Process	GO:0035469	determination of pancreatic left/right asymmetry	CCDC40	IMP		Human	PMID:22693285
Biological Process	GO:0003143	embryonic heart tube morphogenesis	ccdc40	IMP	ZFIN:ZDB-GENO-980202-1298	Zfish	PMID:9334285
Biological Process	GO:0060287	epithelial cilium movement involved in determination of left/right asymmetry	CCDC40	IMP		Human	PMID:21131974
Biological Process	GO:0060287	epithelial cilium movement involved in determination of left/right asymmetry	Ccdc40	IMP		Mouse	MGI:MGI:4936771|PMID:21131974
Biological Process	GO:0060287	epithelial cilium movement involved in determination of left/right asymmetry	ccdc40	IMP		Zfish	PMID:21131974|ZFIN:ZDB-PUB-101209-24
Biological Process	GO:0003351	epithelial cilium movement involved in extracellular fluid movement	CCDC40	IMP		Human	PMID:21131974
Biological Process	GO:0003351	epithelial cilium movement involved in extracellular fluid movement	ccdc40	IMP	ZFIN:ZDB-GENO-980202-1298	Zfish	PMID:17576052
Biological Process	GO:0030317	flagellated sperm motility	CCDC40	IMP		Human	PMID:23255504
Biological Process	GO:0003146	heart jogging	ccdc40	IMP	ZFIN:ZDB-GENO-980202-1298	Zfish	PMID:9334285
Biological Process	GO:0001947	heart looping	CCDC40	IMP		Human	PMID:22693285
Biological Process	GO:0001947	heart looping	ccdc40	IMP	ZFIN:ZDB-GENO-980202-1298	Zfish	PMID:9334285
Biological Process	GO:0036159	inner dynein arm assembly	CCDC40	IMP		Human	PMID:23255504
Biological Process	GO:0030324	lung development	CCDC40	IMP		Human	PMID:22693285
Biological Process	GO:0030324	lung development	Ccdc40	IMP		Mouse	MGI:MGI:4936771|PMID:21131974
Biological Process	GO:0044458	motile cilium assembly	CCDC40	IMP		Human	PMID:23255504
Biological Process	GO:0048793	pronephros development	ccdc40	IMP	ZFIN:ZDB-GENO-980202-956	Zfish	PMID:9007249
Biological Process	GO:0048793	pronephros development	ccdc40	IMP	ZFIN:ZDB-GENO-980202-105	Zfish	PMID:9007249
Biological Process	GO:0048793	pronephros development	ccdc40	IMP	ZFIN:ZDB-GENO-980202-1298	Zfish	PMID:17576052
Biological Process	GO:0048793	pronephros development	ccdc40	IMP	ZFIN:ZDB-GENO-980202-543	Zfish	PMID:9007249
Biological Process	GO:0048793	pronephros development	ccdc40	IMP	ZFIN:ZDB-GENO-980202-1298	Zfish	PMID:9007249
Biological Process	GO:0048793	pronephros development	ccdc40	IMP	ZFIN:ZDB-GENO-980202-1297	Zfish	PMID:9007249
Biological Process	GO:0061512	protein localization to cilium	Ccdc40	IMP	MGI:MGI:3662904	Mouse	PMID:26387594
Biological Process	GO:0003356	regulation of cilium beat frequency	CCDC40	IMP		Human	PMID:21131974
Biological Process	GO:0003356	regulation of cilium beat frequency	CCDC40	IMP		Human	PMID:23255504

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern