Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes CDH13
  • Mouse genes Cdh13
  • Rat genes Cdh13
  • Zfish genes cdh13
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Cdh13

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0055100	adiponectin binding	Cdh13	IDA		Mouse	MGI:MGI:3055457|PMID:15210937
Molecular Function	GO:0045296	cadherin binding	CDH13	IDA		Human	PMID:10601632
Molecular Function	GO:0042802	identical protein binding	Cdh13	IPI	PR:Q9WTR5	Mouse	PMID:15210937
Molecular Function	GO:0071813	lipoprotein particle binding	CDH13	IDA		Human	PMID:11027617
Molecular Function	GO:0030169	low-density lipoprotein particle binding	CDH13	IDA		Human	PMID:16013438
Molecular Function	GO:0005515	protein binding	CDH13	IPI	UniProtKB:P42858	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	Cdh13	IPI	PR:Q60994	Mouse	PMID:15210937
Cellular Component	GO:0005901	caveola	CDH13	IDA		Human	PMID:9650591
Cellular Component	GO:0062023	collagen-containing extracellular matrix	CDH13	HDA		Human	PMID:27559042
Cellular Component	GO:0005737	cytoplasm	CDH13	IDA		Human	PMID:10737605
Cellular Component	GO:0009897	external side of plasma membrane	Cdh13	IDA		Mouse	PMID:15210937
Cellular Component	GO:0070062	extracellular exosome	CDH13	HDA		Human	PMID:23533145
Cellular Component	GO:0005576	extracellular region	CDH13	HDA		Human	PMID:27068509
Cellular Component	GO:0005615	extracellular space	CDH13	IDA		Human	PMID:16873731
Cellular Component	GO:0005925	focal adhesion	CDH13	HDA		Human	PMID:21423176
Cellular Component	GO:0098982	GABA-ergic synapse	Cdh13	IDA		Rat	PMID:26460479|RGD:11353617
Cellular Component	GO:0043005	neuron projection	CDH13	IDA		Human	PMID:10737605
Cellular Component	GO:0048471	perinuclear region of cytoplasm	Cdh13	IDA		Rat	PMID:9506999|RGD:2293554
Cellular Component	GO:0005886	plasma membrane	CDH13	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005886	plasma membrane	CDH13	IDA		Human	PMID:10737605
Cellular Component	GO:0005886	plasma membrane	Cdh13	IDA		Mouse	PMID:12060406
Cellular Component	GO:0005886	plasma membrane	Cdh13	IDA		Rat	PMID:9506999|RGD:2293554
Cellular Component	GO:0045202	synapse	Cdh13	IDA		Rat	PMID:26460479|RGD:11353617
Biological Process	GO:1902262	apoptotic process involved in blood vessel morphogenesis	cdh13	IMP	ZFIN:ZDB-MRPHLNO-170306-5	Zfish	PMID:27834691
Biological Process	GO:0016339	calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules	CDH13	IDA		Human	PMID:10601632
Biological Process	GO:0043542	endothelial cell migration	CDH13	IDA		Human	PMID:14729458
Biological Process	GO:0007156	homophilic cell adhesion via plasma membrane adhesion molecules	CDH13	IDA		Human	PMID:10601632
Biological Process	GO:0043616	keratinocyte proliferation	CDH13	IDA		Human	PMID:15816843
Biological Process	GO:0030032	lamellipodium assembly	CDH13	IDA		Human	PMID:15703273
Biological Process	GO:0051668	localization within membrane	CDH13	IMP		Human	PMID:17573778
Biological Process	GO:0055096	low-density lipoprotein particle mediated signaling	CDH13	IDA		Human	PMID:16013438
Biological Process	GO:0000278	mitotic cell cycle	Cdh13	IEP		Rat	PMID:15364621|RGD:2317829
Biological Process	GO:0007162	negative regulation of cell adhesion	CDH13	IDA		Human	PMID:14729458
Biological Process	GO:0008285	negative regulation of cell population proliferation	CDH13	IDA		Human	PMID:10737605
Biological Process	GO:0050850	positive regulation of calcium-mediated signaling	CDH13	IDA		Human	PMID:16013438
Biological Process	GO:0030335	positive regulation of cell migration	CDH13	IDA		Human	PMID:14729458
Biological Process	GO:0001954	positive regulation of cell-matrix adhesion	CDH13	IMP		Human	PMID:17573778
Biological Process	GO:0001938	positive regulation of endothelial cell proliferation	CDH13	IMP		Human	PMID:15364621
Biological Process	GO:0050927	positive regulation of positive chemotaxis	CDH13	IDA		Human	PMID:16013438
Biological Process	GO:0048661	positive regulation of smooth muscle cell proliferation	CDH13	IMP		Human	PMID:15364621
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	CDH13	IMP		Human	PMID:16099944
Biological Process	GO:0016601	Rac protein signal transduction	CDH13	IMP		Human	PMID:15703273
Biological Process	GO:0030100	regulation of endocytosis	CDH13	IMP		Human	PMID:17573778
Biological Process	GO:0042058	regulation of epidermal growth factor receptor signaling pathway	CDH13	IMP		Human	PMID:17573778
Biological Process	GO:0010033	response to organic substance	Cdh13	IEP		Rat	PMID:17324381|RGD:2293552
Biological Process	GO:0007266	Rho protein signal transduction	CDH13	IMP		Human	PMID:15703273
Biological Process	GO:0002040	sprouting angiogenesis	CDH13	IDA		Human	PMID:16873731

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern