Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes CDH17
  • Mouse genes Cdh17
  • Rat genes Cdh17
  • Zfish genes cdh17
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Cdh17

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005178	integrin binding	CDH17	IPI	UniProtKB:P05556,UniProtKB:P17301	Human	PMID:25336636
Molecular Function	GO:0005515	protein binding	CDH17	IPI	UniProtKB:Q9UHD9	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	Cdh17	IPI	PR:P20764	Mouse	PMID:10906147
Molecular Function	GO:0005427	proton-dependent oligopeptide secondary active transmembrane transporter activity	Cdh17	IDA		Mouse	PMID:8153632
Cellular Component	GO:0016323	basolateral plasma membrane	CDH17	IDA		Human	PMID:15279905
Cellular Component	GO:0016323	basolateral plasma membrane	Cdh17	IDA		Rat	PMID:8207063|RGD:724662
Cellular Component	GO:0030054	cell junction	CDH17	IDA		Human	GO_REF:0000052
Cellular Component	GO:0009986	cell surface	Cdh17	IDA		Mouse	MGI:MGI:3531365|PMID:15688343
Cellular Component	GO:0005654	nucleoplasm	CDH17	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005886	plasma membrane	Cdh17	IDA		Mouse	PMID:15023525
Biological Process	GO:0030183	B cell differentiation	Cdh17	IMP		Mouse	MGI:MGI:3531365|PMID:15688343
Biological Process	GO:0016339	calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules	Cdh17	IDA		Mouse	PMID:10906147
Biological Process	GO:0016339	calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules	Cdh17	IDA		Mouse	PMID:15023525
Biological Process	GO:0002314	germinal center B cell differentiation	Cdh17	IMP		Mouse	MGI:MGI:3531365|PMID:15688343
Biological Process	GO:0007156	homophilic cell adhesion via plasma membrane adhesion molecules	Cdh17	IDA		Mouse	PMID:10906147
Biological Process	GO:0007229	integrin-mediated signaling pathway	CDH17	IMP		Human	PMID:25336636
Biological Process	GO:0002315	marginal zone B cell differentiation	Cdh17	IMP		Mouse	MGI:MGI:3531365|PMID:15688343
Biological Process	GO:0006857	oligopeptide transport	Cdh17	IDA		Mouse	PMID:8153632
Biological Process	GO:0033626	positive regulation of integrin activation by cell surface receptor linked signal transduction	CDH17	IMP		Human	PMID:25336636
Biological Process	GO:0048793	pronephros development	cdh17	IMP		Zfish	PMID:12049763
Biological Process	GO:0048536	spleen development	Cdh17	IMP		Mouse	MGI:MGI:3531365|PMID:15688343

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern