Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes CDH9
  • Mouse genes Cdh9
  • Rat genes Cdh9
  • Zfish genes cdh10a,cdh6
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Cdh9

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0098641	cadherin binding involved in cell-cell adhesion	Cdh9	IPI	UniProtKB:P70407	Mouse	MGI:MGI:5914212|PMID:21867881
Molecular Function	GO:0042802	identical protein binding	Cdh9	IPI	UniProtKB:P70407	Mouse	MGI:MGI:5914212|PMID:21867881
Cellular Component	GO:0030424	axon	Cdh9	IDA		Mouse	MGI:MGI:5914212|PMID:21867881
Cellular Component	GO:0030425	dendrite	Cdh9	IDA		Mouse	MGI:MGI:5914212|PMID:21867881
Cellular Component	GO:0098978	glutamatergic synapse	Cdh9	IDA		Mouse	PMID:21867881
Cellular Component	GO:0098978	glutamatergic synapse	Cdh9	IMP		Mouse	PMID:21867881
Cellular Component	GO:0098978	glutamatergic synapse	Cdh9	IDA		Mouse	PMID:28957665
Cellular Component	GO:0098978	glutamatergic synapse	Cdh9	IMP		Mouse	PMID:28957665
Cellular Component	GO:0098978	glutamatergic synapse	Cdh9	IPI		Mouse	PMID:28957665
Cellular Component	GO:0098686	hippocampal mossy fiber to CA3 synapse	Cdh9	IMP		Mouse	PMID:21867881
Cellular Component	GO:0098686	hippocampal mossy fiber to CA3 synapse	Cdh9	IDA		Mouse	PMID:21867881
Cellular Component	GO:0045211	postsynaptic membrane	Cdh9	IMP		Mouse	PMID:21867881
Cellular Component	GO:0045211	postsynaptic membrane	Cdh9	IDA		Mouse	PMID:21867881
Cellular Component	GO:0045211	postsynaptic membrane	Cdh9	IDA		Rat	PMID:21867881|RGD:13432233
Cellular Component	GO:0042734	presynaptic membrane	Cdh9	IMP		Mouse	PMID:21867881
Cellular Component	GO:0042734	presynaptic membrane	Cdh9	IDA		Mouse	PMID:21867881
Cellular Component	GO:0042734	presynaptic membrane	Cdh9	IDA		Rat	PMID:21867881|RGD:13432233
Cellular Component	GO:0045202	synapse	Cdh9	IDA		Mouse	PMID:28957665
Cellular Component	GO:0045202	synapse	Cdh9	IMP		Mouse	PMID:28957665
Biological Process	GO:0061550	cranial ganglion development	cdh6	IMP	ZFIN:ZDB-MRPHLNO-080910-1	Zfish	PMID:21584906
Biological Process	GO:0021545	cranial nerve development	cdh6	IMP	ZFIN:ZDB-MRPHLNO-080910-1	Zfish	PMID:21584906
Biological Process	GO:0048890	lateral line ganglion development	cdh6	IMP	ZFIN:ZDB-MRPHLNO-080910-1	Zfish	PMID:21584906
Biological Process	GO:0048793	pronephros development	cdh6	IMP	ZFIN:ZDB-MRPHLNO-070602-1	Zfish	PMID:17294363
Biological Process	GO:0048793	pronephros development	cdh6	IMP	ZFIN:ZDB-MRPHLNO-070602-2	Zfish	PMID:17294363
Biological Process	GO:0060042	retina morphogenesis in camera-type eye	cdh6	IMP	ZFIN:ZDB-MRPHLNO-070602-1	Zfish	PMID:18506771
Biological Process	GO:0060042	retina morphogenesis in camera-type eye	cdh6	IMP	ZFIN:ZDB-MRPHLNO-080910-1	Zfish	PMID:18506771
Biological Process	GO:0007416	synapse assembly	Cdh9	IDA		Mouse	PMID:21867881
Biological Process	GO:0007416	synapse assembly	Cdh9	IMP		Mouse	PMID:21867881
Biological Process	GO:0007416	synapse assembly	Cdh9	IMP		Rat	PMID:21867881|RGD:13432233
Biological Process	GO:0099560	synaptic membrane adhesion	Cdh9	IDA		Mouse	PMID:21867881
Biological Process	GO:0099560	synaptic membrane adhesion	Cdh9	IMP		Mouse	PMID:21867881
Biological Process	GO:0099560	synaptic membrane adhesion	Cdh9	IDA		Mouse	PMID:28957665
Biological Process	GO:0099560	synaptic membrane adhesion	Cdh9	IPI		Mouse	PMID:28957665
Biological Process	GO:0099560	synaptic membrane adhesion	Cdh9	IMP		Mouse	PMID:28957665
Biological Process	GO:0099560	synaptic membrane adhesion	Cdh9	IMP		Rat	PMID:21867881|RGD:13432233

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern