Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes CFD
  • Mouse genes Cfd
  • Rat genes Cfd
  • Zfish genes cfd
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Cfd

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0004175	endopeptidase activity	Cfd	IDA		Rat	PMID:1953671|RGD:1624329
Cellular Component	GO:0070062	extracellular exosome	CFD	HDA		Human	PMID:19056867
Cellular Component	GO:0070062	extracellular exosome	CFD	HDA		Human	PMID:23533145
Cellular Component	GO:0005615	extracellular space	Cfd	IDA		Mouse	PMID:7592907
Cellular Component	GO:0005615	extracellular space	Cfd	IDA		Rat	PMID:2197880|RGD:1624327
Biological Process	GO:0006957	complement activation, alternative pathway	Cfd	IMP		Mouse	PMID:27564415
Biological Process	GO:0007219	Notch signaling pathway	Cfd	IMP		Rat	PMID:12949072|RGD:1298875
Biological Process	GO:0009617	response to bacterium	Cfd	IEP		Mouse	PMID:23012479
Biological Process	GO:0060041	retina development in camera-type eye	Cfd	IGI		Mouse	PMID:28057640
Biological Process	GO:0035886	vascular associated smooth muscle cell differentiation	Cfd	IGI		Mouse	PMID:28057640

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern