Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes CHD1
  • Mouse genes Chd1
  • Rat genes Chd1
  • Zfish genes chd1
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Chd1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0035064	methylated histone binding	CHD1	IDA		Human	PMID:21029866
Molecular Function	GO:0035064	methylated histone binding	CHD1	IMP		Human	PMID:28866611
Molecular Function	GO:0005515	protein binding	CHD1	IPI	UniProtKB:B2BUF1	Human	PMID:22419161
Molecular Function	GO:0005515	protein binding	CHD1	IPI	UniProtKB:O60341-1	Human	PMID:26751641
Cellular Component	GO:0005737	cytoplasm	CHD1	IDA		Human	PMID:22046413
Cellular Component	GO:0000228	nuclear chromosome	CHD1	IDA		Human	PMID:9326634
Cellular Component	GO:0005634	nucleus	CHD1	IDA		Human	PMID:22046413
Biological Process	GO:0006338	chromatin remodeling	CHD1	IMP		Human	PMID:28866611
Biological Process	GO:0006338	chromatin remodeling	Chd1	IGI	MGI:MGI:1316736	Mouse	PMID:16415155
Biological Process	GO:0043923	positive regulation by host of viral transcription	CHD1	IMP		Human	PMID:25297984

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern