Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes CIRBP
  • Mouse genes Cirbp
  • Rat genes Cirbp
  • Zfish genes cirbpa,cirbpb
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Cirbp

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003730	mRNA 3'-UTR binding	CIRBP	IDA		Human	PMID:11574538
Molecular Function	GO:0003730	mRNA 3'-UTR binding	CIRBP	IDA		Human	PMID:16513844
Molecular Function	GO:0008266	poly(U) RNA binding	Cirbp	IDA		Mouse	PMID:9151692
Molecular Function	GO:0005515	protein binding	CIRBP	IPI	UniProtKB:P38159	Human	PMID:16189514
Molecular Function	GO:0005515	protein binding	CIRBP	IPI	UniProtKB:Q04637	Human	PMID:16513844
Molecular Function	GO:0005515	protein binding	CIRBP	IPI	UniProtKB:P54253	Human	PMID:16713569
Molecular Function	GO:0005515	protein binding	CIRBP	IPI	UniProtKB:P61978	Human	PMID:21516116
Molecular Function	GO:0005515	protein binding	CIRBP	IPI	UniProtKB:P61978	Human	PMID:22365833
Molecular Function	GO:0005515	protein binding	CIRBP	IPI	UniProtKB:P09012	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	CIRBP	IPI	UniProtKB:P0DJD3	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	CIRBP	IPI	UniProtKB:P38159	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	CIRBP	IPI	UniProtKB:P61978	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	CIRBP	IPI	UniProtKB:Q15415	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	CIRBP	IPI	UniProtKB:Q5VWX1	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	CIRBP	IPI	UniProtKB:Q8TBB1	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	CIRBP	IPI	UniProtKB:P61978	Human	PMID:29892012
Molecular Function	GO:0005515	protein binding	CIRBP	IPI	UniProtKB:P09012	Human	PMID:31515488
Molecular Function	GO:0005515	protein binding	CIRBP	IPI	UniProtKB:Q5VWX1	Human	PMID:31515488
Molecular Function	GO:0005515	protein binding	CIRBP	IPI	UniProtKB:P61978-2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	CIRBP	IPI	UniProtKB:P84103	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	CIRBP	IPI	UniProtKB:P54253	Human	PMID:32814053
Molecular Function	GO:0003723	RNA binding	CIRBP	HDA		Human	PMID:22658674
Molecular Function	GO:0003723	RNA binding	CIRBP	HDA		Human	PMID:22681889
Molecular Function	GO:0003723	RNA binding	Cirbp	IDA		Mouse	PMID:9151692
Molecular Function	GO:0070181	small ribosomal subunit rRNA binding	CIRBP	IDA		Human	PMID:11574538
Molecular Function	GO:0030371	translation repressor activity	Cirbp	IDA		Mouse	MGI:MGI:4418610|PMID:17967451
Cellular Component	GO:0005737	cytoplasm	CIRBP	IDA		Human	PMID:11574538
Cellular Component	GO:0005737	cytoplasm	Cirbp	IDA		Mouse	MGI:MGI:4418610|PMID:17967451
Cellular Component	GO:0010494	cytoplasmic stress granule	Cirbp	IDA		Mouse	MGI:MGI:4418610|PMID:17967451
Cellular Component	GO:0005654	nucleoplasm	CIRBP	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005654	nucleoplasm	Cirbp	IDA		Mouse	PMID:9151692
Cellular Component	GO:0005634	nucleus	CIRBP	IDA		Human	PMID:11574538
Cellular Component	GO:0005634	nucleus	CIRBP	HDA		Human	PMID:16791210
Cellular Component	GO:0005634	nucleus	Cirbp	IDA		Mouse	MGI:MGI:4418610|PMID:17967451
Biological Process	GO:0070417	cellular response to cold	Cirbp	IDA		Mouse	PMID:9151692
Biological Process	GO:0048255	mRNA stabilization	CIRBP	IDA		Human	PMID:11574538
Biological Process	GO:0030308	negative regulation of cell growth	Cirbp	IMP		Mouse	PMID:9151692
Biological Process	GO:0045727	positive regulation of translation	CIRBP	IDA		Human	PMID:11574538
Biological Process	GO:1902806	regulation of cell cycle G1/S phase transition	Cirbp	IDA		Mouse	PMID:9151692
Biological Process	GO:0009409	response to cold	Cirbp	IEP		Rat	PMID:10641716|RGD:724747
Biological Process	GO:0009409	response to cold	cirbpb	IDA		Zfish	PMID:18805806
Biological Process	GO:0009411	response to UV	CIRBP	IDA		Human	PMID:11574538
Biological Process	GO:0034063	stress granule assembly	Cirbp	IDA		Mouse	MGI:MGI:4418610|PMID:17967451

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern