Comparative GO Graph (mouse, human, rat, zebrafish)

Source

Alliance of Genome Resources

Compare experimental GO annotations for Human-Mouse-Rat-Zebrafish orthologs to Mouse Cited1

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

This class contains
- Human genes CITED1
- Mouse genes Cited1
- Rat genes Cited1
- Zfish genes cited1
Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Cited1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003682	chromatin binding	Cited1	IDA		Mouse	MGI:MGI:3768327\|PMID:17938205
Molecular Function	GO:0070410	co-SMAD binding	CITED1	IPI	UniProtKB:Q13485	Human	PMID:9707553
Molecular Function	GO:0050693	LBD domain binding	CITED1	IDA		Human	PMID:11581164
Molecular Function	GO:0005515	protein binding	CITED1	IPI	UniProtKB:P05412	Human	PMID:10327051
Molecular Function	GO:0005515	protein binding	CITED1	IPI	UniProtKB:P15336	Human	PMID:10327051
Molecular Function	GO:0005515	protein binding	CITED1	IPI	UniProtKB:P11142	Human	PMID:10722728
Molecular Function	GO:0005515	protein binding	CITED1	IPI	UniProtKB:Q09472	Human	PMID:10722728
Molecular Function	GO:0005515	protein binding	CITED1	IPI	UniProtKB:Q92793	Human	PMID:10722728
Molecular Function	GO:0005515	protein binding	CITED1	IPI	UniProtKB:P03372	Human	PMID:11581164
Molecular Function	GO:0005515	protein binding	CITED1	IPI	UniProtKB:P35222	Human	PMID:15843474
Molecular Function	GO:0005515	protein binding	CITED1	IPI	UniProtKB:Q09472	Human	PMID:15843474
Molecular Function	GO:0005515	protein binding	CITED1	IPI	UniProtKB:Q09472	Human	PMID:16864582
Molecular Function	GO:0005515	protein binding	CITED1	IPI	UniProtKB:O15405	Human	PMID:21172805
Molecular Function	GO:0005515	protein binding	CITED1	IPI	UniProtKB:P06307	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	CITED1	IPI	UniProtKB:P13473-2	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	CITED1	IPI	UniProtKB:P55212	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	CITED1	IPI	UniProtKB:Q0VDC6	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	CITED1	IPI	UniProtKB:Q13485	Human	PMID:9707553
Molecular Function	GO:0005515	protein binding	Cited1	IPI	UniProtKB:P08152	Mouse	MGI:MGI:3768327\|PMID:17938205
Molecular Function	GO:0005515	protein binding	Cited1	IPI	UniProtKB:Q09472	Mouse	MGI:MGI:1354847\|PMID:10722728
Molecular Function	GO:0005515	protein binding	Cited1	IPI	UniProtKB:P45481	Mouse	MGI:MGI:1354847\|PMID:10722728
Molecular Function	GO:0042803	protein homodimerization activity	CITED1	IDA		Human	PMID:21172805
Molecular Function	GO:0003713	transcription coactivator activity	CITED1	IDA		Human	PMID:11581164
Molecular Function	GO:0003713	transcription coactivator activity	CITED1	IDA		Human	PMID:16864582
Molecular Function	GO:0003713	transcription coactivator activity	CITED1	IDA		Human	PMID:21172805
Molecular Function	GO:0003713	transcription coactivator activity	CITED1	IDA		Human	PMID:9707553
Cellular Component	GO:0005737	cytoplasm	CITED1	IDA		Human	PMID:16864582
Cellular Component	GO:0005737	cytoplasm	CITED1	IDA		Human	PMID:17710162
Cellular Component	GO:0005737	cytoplasm	Cited1	IDA		Mouse	MGI:MGI:3717986\|PMID:17615577
Cellular Component	GO:0005737	cytoplasm	Cited1	IDA		Mouse	MGI:MGI:3027297\|PMID:14673158
Cellular Component	GO:0005737	cytoplasm	Cited1	IDA		Rat	PMID:17710162\|RGD:8554142
Cellular Component	GO:0005829	cytosol	CITED1	IDA		Human	PMID:16864582
Cellular Component	GO:0005829	cytosol	Cited1	IDA		Mouse	MGI:MGI:4412463\|PMID:11581164
Cellular Component	GO:0005634	nucleus	CITED1	IDA		Human	PMID:16864582
Cellular Component	GO:0005634	nucleus	CITED1	IDA		Human	PMID:8901575
Cellular Component	GO:0005634	nucleus	CITED1	IDA		Human	PMID:9434189
Cellular Component	GO:0005634	nucleus	Cited1	IDA		Mouse	MGI:MGI:3768327\|PMID:17938205
Cellular Component	GO:0005634	nucleus	Cited1	IDA		Mouse	MGI:MGI:1312962\|PMID:9811838
Cellular Component	GO:0005634	nucleus	Cited1	IDA		Mouse	MGI:MGI:83705\|PMID:8901575
Cellular Component	GO:0005634	nucleus	Cited1	IDA		Mouse	MGI:MGI:4412463\|PMID:11581164
Cellular Component	GO:0005634	nucleus	Cited1	IDA		Mouse	MGI:MGI:3027297\|PMID:14673158
Cellular Component	GO:0005634	nucleus	Cited1	IDA		Mouse	MGI:MGI:3693257\|PMID:17047318
Biological Process	GO:0007420	brain development	Cited1	IEP		Mouse	MGI:MGI:3693257\|PMID:17047318
Biological Process	GO:0001658	branching involved in ureteric bud morphogenesis	Cited1	IMP		Rat	PMID:15843474\|RGD:8554075
Biological Process	GO:0000578	embryonic axis specification	Cited1	IDA		Rat	PMID:15843474\|RGD:8554075
Biological Process	GO:0060711	labyrinthine layer development	Cited1	IMP	MGI:MGI:3028946	Mouse	PMID:14673158
Biological Process	GO:0042438	melanin biosynthetic process	Cited1	IDA		Mouse	MGI:MGI:4412464\|PMID:11434569
Biological Process	GO:0030318	melanocyte differentiation	CITED1	IEP		Human	PMID:8901575
Biological Process	GO:0030318	melanocyte differentiation	Cited1	IEP		Mouse	MGI:MGI:83705\|PMID:8901575
Biological Process	GO:0045892	negative regulation of DNA-templated transcription	CITED1	IDA		Human	PMID:11581164
Biological Process	GO:0045892	negative regulation of DNA-templated transcription	Cited1	IDA		Rat	PMID:15843474\|RGD:8554075
Biological Process	GO:0003340	negative regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis	Cited1	IMP		Rat	PMID:15843474\|RGD:8554075
Biological Process	GO:0043524	negative regulation of neuron apoptotic process	CITED1	IDA		Human	PMID:21172805
Biological Process	GO:0045668	negative regulation of osteoblast differentiation	Cited1	IMP		Mouse	MGI:MGI:4410428\|PMID:18187554
Biological Process	GO:0006913	nucleocytoplasmic transport	CITED1	IDA		Human	PMID:16864582
Biological Process	GO:0043473	pigmentation	CITED1	IEP		Human	PMID:8901575
Biological Process	GO:0043473	pigmentation	Cited1	IEP		Mouse	MGI:MGI:83705\|PMID:8901575
Biological Process	GO:0043473	pigmentation	Cited1	IDA		Mouse	MGI:MGI:4412464\|PMID:11434569
Biological Process	GO:0001890	placenta development	Cited1	IMP		Mouse	MGI:MGI:3027297\|PMID:14673158
Biological Process	GO:0045893	positive regulation of DNA-templated transcription	CITED1	IDA		Human	PMID:9434189
Biological Process	GO:0045893	positive regulation of DNA-templated transcription	CITED1	IDA		Human	PMID:9707553
Biological Process	GO:0045893	positive regulation of DNA-templated transcription	Cited1	IDA		Mouse	MGI:MGI:1312962\|PMID:9811838
Biological Process	GO:0045893	positive regulation of DNA-templated transcription	Cited1	IDA		Mouse	MGI:MGI:3768327\|PMID:17938205
Biological Process	GO:0045893	positive regulation of DNA-templated transcription	Cited1	IDA		Rat	PMID:15843474\|RGD:8554075
Biological Process	GO:0010628	positive regulation of gene expression	Cited1	IDA		Mouse	MGI:MGI:4412464\|PMID:11434569
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	CITED1	IDA		Human	PMID:21172805
Biological Process	GO:0042981	regulation of apoptotic process	CITED1	IDA		Human	PMID:21172805
Biological Process	GO:0090183	regulation of kidney development	Cited1	IEP		Rat	PMID:18467665\|RGD:155631277
Biological Process	GO:0051591	response to cAMP	Cited1	IDA		Mouse	MGI:MGI:4410428\|PMID:18187554
Biological Process	GO:0034097	response to cytokine	Cited1	IDA		Mouse	MGI:MGI:1312962\|PMID:9811838
Biological Process	GO:0043627	response to estrogen	CITED1	IDA		Human	PMID:11581164
Biological Process	GO:0032868	response to insulin	Cited1	IDA		Mouse	MGI:MGI:1312962\|PMID:9811838
Biological Process	GO:0070555	response to interleukin-1	Cited1	IDA		Mouse	MGI:MGI:1312962\|PMID:9811838
Biological Process	GO:0071105	response to interleukin-11	Cited1	IDA		Mouse	MGI:MGI:1312962\|PMID:9811838
Biological Process	GO:0070669	response to interleukin-2	Cited1	IDA		Mouse	MGI:MGI:1312962\|PMID:9811838
Biological Process	GO:0070670	response to interleukin-4	Cited1	IDA		Mouse	MGI:MGI:1312962\|PMID:9811838
Biological Process	GO:0070741	response to interleukin-6	Cited1	IDA		Mouse	MGI:MGI:1312962\|PMID:9811838
Biological Process	GO:0071104	response to interleukin-9	Cited1	IDA		Mouse	MGI:MGI:1312962\|PMID:9811838
Biological Process	GO:0032496	response to lipopolysaccharide	Cited1	IDA		Mouse	MGI:MGI:1312962\|PMID:9811838
Biological Process	GO:0071107	response to parathyroid hormone	Cited1	IDA		Mouse	MGI:MGI:4410428\|PMID:18187554
Biological Process	GO:0071559	response to transforming growth factor beta	CITED1	IDA		Human	PMID:9707553
Biological Process	GO:0034341	response to type II interferon	Cited1	IDA		Mouse	MGI:MGI:1312962\|PMID:9811838
Biological Process	GO:0060395	SMAD protein signal transduction	CITED1	IDA		Human	PMID:9707553
Biological Process	GO:0060712	spongiotrophoblast layer development	Cited1	IMP	MGI:MGI:3028946	Mouse	PMID:14673158
Biological Process	GO:0007179	transforming growth factor beta receptor signaling pathway	CITED1	IDA		Human	PMID:9707553
Biological Process	GO:0001570	vasculogenesis	Cited1	IMP	MGI:MGI:3028946	Mouse	PMID:14673158

Gene Ontology Evidence Code Abbreviations:

EXP Inferred from experiment

IDA Inferred from direct assay

IEP Inferred from expression pattern

IGI Inferred from genetic interaction

IMP Inferred from mutant phenotype

IPI Inferred from physical interaction

HTP Inferred from High Throughput Experiment

HDA Inferred from High Throughput Direct Assay

HMP Inferred from High Throughput Mutant Phenotype

HGI Inferred from High Throughput Genetic Interaction

HEP Inferred from High Throughput Expression Pattern

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 07/05/2024 MGI 6.24

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023. Complete table of the annotations represented in this image is provided below.

Molecular Function

Cellular Component

Biological Process

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.