Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes CLEC3B
  • Mouse genes Clec3b
  • Rat genes Clec3b
  • Zfish genes clec3ba,clec3bb
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Clec3b

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005509	calcium ion binding	CLEC3B	IDA		Human	PMID:9786936
Molecular Function	GO:0008201	heparin binding	CLEC3B	IDA		Human	PMID:10727405
Molecular Function	GO:0036143	kringle domain binding	CLEC3B	IPI	UniProtKB:P00747	Human	PMID:9786936
Molecular Function	GO:0005515	protein binding	Clec3b	IPI	UniProtKB:P00750|UniProtKB:P06868|UniProtKB:P14210	Mouse	MGI:MGI:5447625|PMID:12694198
Cellular Component	GO:0062023	collagen-containing extracellular matrix	CLEC3B	HDA		Human	PMID:28675934
Cellular Component	GO:0005737	cytoplasm	CLEC3B	IDA		Human	PMID:15848710
Cellular Component	GO:0005737	cytoplasm	CLEC3B	IDA		Human	PMID:15901484
Cellular Component	GO:0005737	cytoplasm	CLEC3B	IDA		Human	PMID:7798325
Cellular Component	GO:0005737	cytoplasm	Clec3b	IDA		Mouse	MGI:MGI:5447619|PMID:15848710
Cellular Component	GO:0070062	extracellular exosome	CLEC3B	HDA		Human	PMID:23533145
Cellular Component	GO:0005576	extracellular region	CLEC3B	HDA		Human	PMID:27068509
Cellular Component	GO:0005615	extracellular space	CLEC3B	IDA		Human	PMID:15901484
Cellular Component	GO:0005615	extracellular space	CLEC3B	HDA		Human	PMID:20551380
Cellular Component	GO:0005615	extracellular space	CLEC3B	IDA		Human	PMID:7798325
Cellular Component	GO:0001652	granular component	CLEC3B	IDA		Human	PMID:15848710
Biological Process	GO:0030282	bone mineralization	CLEC3B	IEP		Human	PMID:7589422
Biological Process	GO:0030282	bone mineralization	CLEC3B	IDA		Human	PMID:7798325
Biological Process	GO:0071310	cellular response to organic substance	CLEC3B	IEP		Human	PMID:7589422
Biological Process	GO:0071560	cellular response to transforming growth factor beta stimulus	CLEC3B	IEP		Human	PMID:7589422
Biological Process	GO:0001503	ossification	CLEC3B	IEP		Human	PMID:7798325
Biological Process	GO:0001503	ossification	Clec3b	IEP		Mouse	MGI:MGI:5447635|PMID:7798325
Biological Process	GO:0001503	ossification	Clec3b	IEP		Rat	PMID:7798325|RGD:8554609
Biological Process	GO:0010756	positive regulation of plasminogen activation	Clec3b	IDA		Mouse	MGI:MGI:5447625|PMID:12694198
Biological Process	GO:0001501	skeletal system development	Clec3b	IMP	MGI:MGI:2178555	Mouse	PMID:11604516

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern