Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes CNBP
  • Mouse genes Cnbp
  • Rat genes Cnbp
  • Zfish genes cnbpa,cnbpb
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Cnbp

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003682	chromatin binding	cnbpa	IDA		Zfish	PMID:25151948
Molecular Function	GO:0051880	G-quadruplex DNA binding	CNBP	IDA		Human	PMID:23774591
Molecular Function	GO:0003730	mRNA 3'-UTR binding	cnbpa	IDA		Zfish	PMID:31227602
Molecular Function	GO:0005515	protein binding	CNBP	IPI	UniProtKB:Q63009	Human	PMID:24726729
Molecular Function	GO:0003723	RNA binding	CNBP	HDA		Human	PMID:22658674
Molecular Function	GO:0003723	RNA binding	CNBP	HDA		Human	PMID:22681889
Molecular Function	GO:0003723	RNA binding	cnbpa	IDA		Zfish	PMID:15276211
Molecular Function	GO:0043565	sequence-specific DNA binding	cnbpa	IDA		Zfish	PMID:23667590
Molecular Function	GO:0003697	single-stranded DNA binding	Cnbp	IDA		Rat	PMID:7788528|RGD:632384
Molecular Function	GO:0003697	single-stranded DNA binding	cnbpa	IDA		Zfish	PMID:15276211
Molecular Function	GO:0003727	single-stranded RNA binding	Cnbp	IDA		Rat	PMID:7788528|RGD:632384
Cellular Component	GO:0005829	cytosol	Cnbp	IDA		Mouse	PMID:7896269
Cellular Component	GO:0005783	endoplasmic reticulum	Cnbp	IDA		Mouse	PMID:7896269
Cellular Component	GO:0005634	nucleus	Cnbp	IDA		Mouse	PMID:12706888
Biological Process	GO:0051216	cartilage development	cnbpa	IMP	ZFIN:ZDB-MRPHLNO-111101-3	Zfish	PMID:21999883
Biological Process	GO:0048703	embryonic viscerocranium morphogenesis	cnbpa	IMP		Zfish	PMID:25151948
Biological Process	GO:0071919	G-quadruplex DNA formation	CNBP	IDA		Human	PMID:23774591
Biological Process	GO:0060322	head development	cnbpa	IMP	ZFIN:ZDB-MRPHLNO-111101-3	Zfish	PMID:21999883
Biological Process	GO:0045892	negative regulation of DNA-templated transcription	cnbpa	IMP	ZFIN:ZDB-MRPHLNO-111101-3	Zfish	PMID:23667590
Biological Process	GO:0000122	negative regulation of transcription by RNA polymerase II	CNBP	IDA		Human	PMID:23774591
Biological Process	GO:0014036	neural crest cell fate specification	cnbpa	IMP	ZFIN:ZDB-MRPHLNO-111101-3	Zfish	PMID:21999883
Biological Process	GO:0014029	neural crest formation	cnbpa	IMP	ZFIN:ZDB-MRPHLNO-111101-3	Zfish	PMID:21999883
Biological Process	GO:0008284	positive regulation of cell population proliferation	Cnbp	IDA		Mouse	PMID:12706888
Biological Process	GO:0045893	positive regulation of DNA-templated transcription	Cnbp	IDA		Mouse	MGI:MGI:2658748|PMID:12706888
Biological Process	GO:0045893	positive regulation of DNA-templated transcription	cnbpa	IMP	ZFIN:ZDB-MRPHLNO-111101-3	Zfish	PMID:23667590
Biological Process	GO:0045089	positive regulation of innate immune response	cnbpb	IMP		Zfish	PMID:28168305|ZFIN:ZDB-PUB-170421-12
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	Cnbp	IDA		Mouse	PMID:12706888
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	cnbpa	IDA		Zfish	PMID:25151948
Biological Process	GO:0050727	regulation of inflammatory response	cnbpa	IMP	ZFIN:ZDB-MRPHLNO-170614-1	Zfish	PMID:28168305
Biological Process	GO:0050727	regulation of inflammatory response	cnbpa	IMP	ZFIN:ZDB-MRPHLNO-111101-3	Zfish	PMID:28168305

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern