Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes COL10A1
  • Mouse genes Col10a1
  • Rat genes Col10a1
  • Zfish genes col10a1a,col10a1b
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Col10a1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0030020	extracellular matrix structural constituent conferring tensile strength	COL10A1	HDA		Human	PMID:28344315
Molecular Function	GO:0005515	protein binding	COL10A1	IPI	UniProtKB:Q8N9N5	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	COL10A1	IPI	UniProtKB:Q9UMX0	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	COL10A1	IPI	UniProtKB:Q9UMX0-2	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	COL10A1	IPI	UniProtKB:P62760	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	COL10A1	IPI	UniProtKB:Q14696	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	COL10A1	IPI	UniProtKB:Q16656-4	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	COL10A1	IPI	UniProtKB:Q86VK4-3	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	COL10A1	IPI	UniProtKB:Q8N9N5-2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	COL10A1	IPI	UniProtKB:Q96EQ0	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	COL10A1	IPI	UniProtKB:Q9UHD4	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	COL10A1	IPI	UniProtKB:Q9UHD9	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	COL10A1	IPI	UniProtKB:Q9UMX0	Human	PMID:32296183
Cellular Component	GO:0005938	cell cortex	Col10a1	IDA		Mouse	PMID:9008714
Cellular Component	GO:0005581	collagen trimer	Col10a1	IDA		Mouse	PMID:20812917
Cellular Component	GO:0005599	collagen type X trimer	COL10A1	IPI		Human	PMID:11839302
Cellular Component	GO:0062023	collagen-containing extracellular matrix	COL10A1	EXP		Human	PMID:17876790
Cellular Component	GO:0062023	collagen-containing extracellular matrix	COL10A1	HDA		Human	PMID:28344315
Cellular Component	GO:0062023	collagen-containing extracellular matrix	COL10A1	HDA		Human	PMID:25037231
Cellular Component	GO:0062023	collagen-containing extracellular matrix	Col10a1	HDA		Mouse	MGI:MGI:6201834|PMID:22159717
Cellular Component	GO:0062023	collagen-containing extracellular matrix	Col10a1	HDA		Mouse	MGI:MGI:6201853|PMID:28071719
Cellular Component	GO:0062023	collagen-containing extracellular matrix	Col10a1	IDA		Rat	PMID:7649371|RGD:1298775
Cellular Component	GO:0031012	extracellular matrix	Col10a1	IDA		Mouse	PMID:22206015
Cellular Component	GO:0031012	extracellular matrix	Col10a1	IDA		Mouse	PMID:9449075
Biological Process	GO:0051216	cartilage development	Col10a1	IMP		Rat	PMID:10853827|RGD:704421
Biological Process	GO:0001958	endochondral ossification	Col10a1	IMP		Rat	PMID:10853827|RGD:704421
Biological Process	GO:0031101	fin regeneration	col10a1a	IMP	ZFIN:ZDB-MRPHLNO-160627-3	Zfish	PMID:26933814

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern