Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes COL11A1
  • Mouse genes Col11a1
  • Rat genes Col11a1
  • Zfish genes col11a1a,col11a1b
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Col11a1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:1904399	heparan sulfate binding	Col11a1	IDA		Rat	PMID:17062562|RGD:1600882
Molecular Function	GO:0008201	heparin binding	Col11a1	IDA		Rat	PMID:17062562|RGD:1600882
Cellular Component	GO:0005581	collagen trimer	Col11a1	IDA		Mouse	PMID:17683922
Cellular Component	GO:0005592	collagen type XI trimer	COL11A1	IDA		Human	PMID:3182841
Cellular Component	GO:0062023	collagen-containing extracellular matrix	COL11A1	HDA		Human	PMID:28327460
Cellular Component	GO:0062023	collagen-containing extracellular matrix	COL11A1	HDA		Human	PMID:28675934
Cellular Component	GO:0062023	collagen-containing extracellular matrix	Col11a1	HDA		Mouse	MGI:MGI:6201853|PMID:28071719
Cellular Component	GO:0062023	collagen-containing extracellular matrix	Col11a1	IDA		Rat	PMID:17062562|RGD:1600882
Cellular Component	GO:0031012	extracellular matrix	Col11a1	IDA		Mouse	PMID:24735995
Cellular Component	GO:0031012	extracellular matrix	Col11a1	IDA		Mouse	PMID:17029294
Cellular Component	GO:0005615	extracellular space	Col11a1	HDA		Mouse	MGI:MGI:5640941|PMID:24006456
Biological Process	GO:0001502	cartilage condensation	Col11a1	IMP	MGI:MGI:1856399	Mouse	PMID:3070812
Biological Process	GO:0051216	cartilage development	Col11a1	IMP	MGI:MGI:1856399	Mouse	PMID:4100752
Biological Process	GO:0051216	cartilage development	Col11a1	IMP	MGI:MGI:1856399	Mouse	PMID:4110409
Biological Process	GO:0051216	cartilage development	Col11a1	IMP	MGI:MGI:1856399	Mouse	MGI:MGI:60257
Biological Process	GO:0051216	cartilage development	Col11a1	IMP	MGI:MGI:1856399	Mouse	PMID:7859283
Biological Process	GO:0051216	cartilage development	Col11a1	IMP	MGI:MGI:1856399	Mouse	PMID:886247
Biological Process	GO:0051216	cartilage development	col11a1a	IMP	ZFIN:ZDB-MRPHLNO-210412-1	Zfish	PMID:32872105
Biological Process	GO:0051216	cartilage development	col11a1a	IMP	ZFIN:ZDB-MRPHLNO-210412-5	Zfish	PMID:32872105
Biological Process	GO:0051216	cartilage development	col11a1a	IMP	ZFIN:ZDB-MRPHLNO-210412-3	Zfish	PMID:32872105
Biological Process	GO:0002063	chondrocyte development	Col11a1	IMP	MGI:MGI:1856399	Mouse	PMID:4100752
Biological Process	GO:0030199	collagen fibril organization	Col11a1	IGI	MGI:MGI:88457	Mouse	PMID:21467034
Biological Process	GO:0030199	collagen fibril organization	Col11a1	IGI	MGI:MGI:88457	Mouse	PMID:17029294
Biological Process	GO:0030199	collagen fibril organization	Col11a1	IMP	MGI:MGI:1856399	Mouse	PMID:7859283
Biological Process	GO:0030199	collagen fibril organization	Col11a1	IMP	MGI:MGI:1856399	Mouse	PMID:21467034
Biological Process	GO:0030199	collagen fibril organization	Col11a1	IMP	MGI:MGI:1856399	Mouse	PMID:17029294
Biological Process	GO:0030199	collagen fibril organization	Col11a1	IMP	MGI:MGI:1856399	Mouse	PMID:3070812
Biological Process	GO:0030199	collagen fibril organization	Col11a1	IMP	MGI:MGI:1856399	Mouse	PMID:4110409
Biological Process	GO:0030199	collagen fibril organization	Col11a1	IMP	MGI:MGI:1856399	Mouse	PMID:4100752
Biological Process	GO:0030199	collagen fibril organization	Col11a1	IMP	MGI:MGI:1856399	Mouse	PMID:17683922
Biological Process	GO:0050910	detection of mechanical stimulus involved in sensory perception of sound	COL11A1	IMP		Human	PMID:10889003
Biological Process	GO:0048704	embryonic skeletal system morphogenesis	Col11a1	IMP	MGI:MGI:1856399	Mouse	PMID:4100752
Biological Process	GO:0035987	endodermal cell differentiation	COL11A1	IEP		Human	PMID:23154389
Biological Process	GO:0003007	heart morphogenesis	Col11a1	IGI	MGI:MGI:88457	Mouse	PMID:17029294
Biological Process	GO:0042472	inner ear morphogenesis	Col11a1	IMP	MGI:MGI:1856399	Mouse	PMID:1952599
Biological Process	GO:0030903	notochord development	col11a1a	IMP	ZFIN:ZDB-MRPHLNO-210412-1	Zfish	PMID:32872105
Biological Process	GO:0030903	notochord development	col11a1a	IMP	ZFIN:ZDB-MRPHLNO-210412-5	Zfish	PMID:32872105
Biological Process	GO:0030903	notochord development	col11a1a	IMP	ZFIN:ZDB-GENO-220627-2	Zfish	PMID:32872105
Biological Process	GO:0030903	notochord development	col11a1a	IMP	ZFIN:ZDB-GENO-220627-1	Zfish	PMID:32872105
Biological Process	GO:0030903	notochord development	col11a1b	IMP	ZFIN:ZDB-MRPHLNO-210412-2	Zfish	PMID:32872105
Biological Process	GO:0030903	notochord development	col11a1a	IMP	ZFIN:ZDB-MRPHLNO-210412-3	Zfish	PMID:32872105
Biological Process	GO:0001503	ossification	Col11a1	IEP		Rat	PMID:9822201|RGD:70694
Biological Process	GO:0006029	proteoglycan metabolic process	Col11a1	IMP	MGI:MGI:1856399	Mouse	PMID:3070812
Biological Process	GO:0007605	sensory perception of sound	COL11A1	IMP		Human	PMID:10573014
Biological Process	GO:0048705	skeletal system morphogenesis	Col11a1	IMP	MGI:MGI:1856399	Mouse	PMID:7859283
Biological Process	GO:0035989	tendon development	Col11a1	IMP	MGI:MGI:1856399	Mouse	PMID:21467034
Biological Process	GO:0035989	tendon development	Col11a1	IGI	MGI:MGI:88457	Mouse	PMID:21467034
Biological Process	GO:0055010	ventricular cardiac muscle tissue morphogenesis	Col11a1	IMP	MGI:MGI:1856399	Mouse	PMID:17029294
Biological Process	GO:0007601	visual perception	COL11A1	IMP		Human	PMID:10573014
Biological Process	GO:0007601	visual perception	COL11A1	IMP		Human	PMID:8872475

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern