Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes COL13A1
  • Mouse genes Col13a1
  • Rat genes Col13a1
  • Zfish genes col13a1
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Col13a1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0008201	heparin binding	COL13A1	IDA		Human	PMID:11956183
Molecular Function	GO:0005515	protein binding	COL13A1	IPI	UniProtKB:P02751	Human	PMID:11956183
Molecular Function	GO:0005515	protein binding	COL13A1	IPI	UniProtKB:P98160	Human	PMID:11956183
Molecular Function	GO:0005515	protein binding	COL13A1	IPI	UniProtKB:Q14112	Human	PMID:11956183
Cellular Component	GO:0005911	cell-cell junction	Col13a1	IDA		Mouse	PMID:11470398
Cellular Component	GO:0062023	collagen-containing extracellular matrix	COL13A1	HDA		Human	PMID:25037231
Cellular Component	GO:0062023	collagen-containing extracellular matrix	COL13A1	HDA		Human	PMID:28675934
Cellular Component	GO:0062023	collagen-containing extracellular matrix	Col13a1	HDA		Mouse	MGI:MGI:6201834|PMID:22159717
Biological Process	GO:0098609	cell-cell adhesion	COL13A1	IEP		Human	PMID:10865988
Biological Process	GO:0007160	cell-matrix adhesion	COL13A1	IPI	UniProtKB:P02751	Human	PMID:11956183
Biological Process	GO:0001958	endochondral ossification	Col13a1	IEP		Mouse	MGI:MGI:2157681|PMID:11470398
Biological Process	GO:0001763	morphogenesis of a branching structure	Col13a1	IEP		Mouse	MGI:MGI:2157681|PMID:11470398

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern