Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes COL15A1
  • Mouse genes Col15a1
  • Rat genes Col15a1
  • Zfish genes col15a1a,col15a1b
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Col15a1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	Col15a1	IPI	UniProtKB:Q9WVJ9	Mouse	MGI:MGI:3709425|PMID:17324935
Cellular Component	GO:0005604	basement membrane	Col15a1	IDA		Mouse	PMID:18757743
Cellular Component	GO:0062023	collagen-containing extracellular matrix	COL15A1	HDA		Human	PMID:20551380
Cellular Component	GO:0062023	collagen-containing extracellular matrix	COL15A1	HDA		Human	PMID:27068509
Cellular Component	GO:0062023	collagen-containing extracellular matrix	COL15A1	HDA		Human	PMID:27559042
Cellular Component	GO:0062023	collagen-containing extracellular matrix	COL15A1	HDA		Human	PMID:25037231
Cellular Component	GO:0062023	collagen-containing extracellular matrix	COL15A1	HDA		Human	PMID:28675934
Cellular Component	GO:0062023	collagen-containing extracellular matrix	Col15a1	HDA		Mouse	MGI:MGI:6201853|PMID:28071719
Cellular Component	GO:0062023	collagen-containing extracellular matrix	Col15a1	HDA		Mouse	MGI:MGI:6201834|PMID:22159717
Cellular Component	GO:0070062	extracellular exosome	COL15A1	HDA		Human	PMID:19056867
Cellular Component	GO:0070062	extracellular exosome	COL15A1	HDA		Human	PMID:23533145
Cellular Component	GO:0005615	extracellular space	COL15A1	HDA		Human	PMID:20551380
Cellular Component	GO:0005615	extracellular space	Col15a1	HDA		Mouse	MGI:MGI:5640941|PMID:24006456
Biological Process	GO:0001654	eye development	col15a1b	IMP	ZFIN:ZDB-MRPHLNO-101101-1	Zfish	PMID:20549708
Biological Process	GO:0060034	notochord cell differentiation	col15a1a	IMP	ZFIN:ZDB-MRPHLNO-080918-3	Zfish	PMID:18281032
Biological Process	GO:1905812	regulation of motor neuron axon guidance	col15a1b	IMP	ZFIN:ZDB-GENO-170515-1	Zfish	PMID:26937007
Biological Process	GO:0007519	skeletal muscle tissue development	col15a1a	IMP	ZFIN:ZDB-MRPHLNO-080918-3	Zfish	PMID:18281032

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern