Comparative GO Graph (mouse, human, rat, zebrafish)

Source

Alliance of Genome Resources

Compare experimental GO annotations for Human-Mouse-Rat-Zebrafish orthologs to Mouse Copb1

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

This class contains
- Human genes COPB1
- Mouse genes Copb1
- Rat genes Copb1
- Zfish genes copb1
Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Copb1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	COPB1	IPI	UniProtKB:P03406	Human	PMID:10199403
Molecular Function	GO:0005515	protein binding	COPB1	IPI	UniProtKB:P17693	Human	PMID:11520457
Molecular Function	GO:0005515	protein binding	COPB1	IPI	UniProtKB:P17693	Human	PMID:12582157
Molecular Function	GO:0005515	protein binding	COPB1	IPI	UniProtKB:O94972	Human	PMID:16189514
Molecular Function	GO:0005515	protein binding	COPB1	IPI	UniProtKB:P42858	Human	PMID:17500595
Molecular Function	GO:0005515	protein binding	COPB1	IPI	UniProtKB:Q9EQC5	Human	PMID:18556652
Molecular Function	GO:0005515	protein binding	COPB1	IPI	UniProtKB:Q9UH99	Human	PMID:20551905
Molecular Function	GO:0005515	protein binding	COPB1	IPI	UniProtKB:Q9UH99	Human	PMID:22555292
Molecular Function	GO:0005515	protein binding	COPB1	IPI	UniProtKB:Q12893	Human	PMID:24806965
Molecular Function	GO:0005515	protein binding	COPB1	IPI	UniProtKB:Q96RS6	Human	PMID:25036637
Molecular Function	GO:0005515	protein binding	COPB1	IPI	UniProtKB:Q96RS6	Human	PMID:29021621
Molecular Function	GO:0005515	protein binding	COPB1	IPI	UniProtKB:Q5BJD5	Human	PMID:30352685
Molecular Function	GO:0005515	protein binding	COPB1	IPI	UniProtKB:Q9BSA4	Human	PMID:30670146
Molecular Function	GO:0005515	protein binding	COPB1	IPI	UniProtKB:O94972	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	COPB1	IPI	UniProtKB:P48444	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	COPB1	IPI	UniProtKB:P56945	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	COPB1	IPI	UniProtKB:Q86T90	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	COPB1	IPI	UniProtKB:Q9BZE4	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	COPB1	IPI	UniProtKB:Q9Y250	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	COPB1	IPI	UniProtKB:P42858	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	Copb1	IPI	UniProtKB:Q9EQC5	Rat	PMID:18556652\|RGD:8554152
Molecular Function	GO:0005515	protein binding	Copb1	IPI	UniProtKB:P53619	Rat	PMID:8858162\|RGD:8554768
Cellular Component	GO:0030126	COPI vesicle coat	Copb1	IDA		Rat	PMID:1840503\|RGD:632446
Cellular Component	GO:0030137	COPI-coated vesicle	Copb1	IDA		Mouse	PMID:19587158
Cellular Component	GO:0005829	cytosol	COPB1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005794	Golgi apparatus	COPB1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005794	Golgi apparatus	COPB1	IDA		Human	PMID:7573041
Cellular Component	GO:0005794	Golgi apparatus	Copb1	IDA		Mouse	PMID:10747018
Cellular Component	GO:0005794	Golgi apparatus	Copb1	IDA		Mouse	PMID:8947846
Cellular Component	GO:0005794	Golgi apparatus	Copb1	IDA		Mouse	PMID:10444069
Cellular Component	GO:0005794	Golgi apparatus	Copb1	IDA		Rat	PMID:15728249\|RGD:8554056
Cellular Component	GO:0005794	Golgi apparatus	Copb1	IDA		Rat	PMID:1840503\|RGD:632446
Cellular Component	GO:0005798	Golgi-associated vesicle	Copb1	IDA		Rat	PMID:1840503\|RGD:632446
Cellular Component	GO:0043231	intracellular membrane-bounded organelle	COPB1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0016020	membrane	COPB1	HDA		Human	PMID:19946888
Biological Process	GO:0006891	intra-Golgi vesicle-mediated transport	Copb1	IDA		Rat	PMID:1840503\|RGD:632446
Biological Process	GO:0030903	notochord development	copb1	IMP	ZFIN:ZDB-GENO-980202-1281	Zfish	PMID:9007233
Biological Process	GO:0030903	notochord development	copb1	IMP	ZFIN:ZDB-GENO-980202-1282	Zfish	PMID:9007233
Biological Process	GO:0030903	notochord development	copb1	IMP	ZFIN:ZDB-GENO-980202-919	Zfish	PMID:9007233
Biological Process	GO:0030903	notochord development	copb1	IMP	ZFIN:ZDB-GENO-980202-1060	Zfish	PMID:9007233
Biological Process	GO:0030903	notochord development	copb1	IMP	ZFIN:ZDB-GENO-980202-1280	Zfish	PMID:9007233
Biological Process	GO:0030903	notochord development	copb1	IMP	ZFIN:ZDB-GENO-980202-1283	Zfish	PMID:15469843
Biological Process	GO:0030903	notochord development	copb1	IMP	ZFIN:ZDB-GENO-980202-1283	Zfish	PMID:9007233
Biological Process	GO:0061053	somite development	copb1	IMP	ZFIN:ZDB-GENO-980202-1060	Zfish	PMID:9007233
Biological Process	GO:0061053	somite development	copb1	IMP	ZFIN:ZDB-GENO-980202-1283	Zfish	PMID:9007233
Biological Process	GO:0061053	somite development	copb1	IMP	ZFIN:ZDB-GENO-980202-1282	Zfish	PMID:9007233
Biological Process	GO:0061053	somite development	copb1	IMP	ZFIN:ZDB-GENO-980202-919	Zfish	PMID:9007233
Biological Process	GO:0061053	somite development	copb1	IMP	ZFIN:ZDB-GENO-980202-1280	Zfish	PMID:9007233
Biological Process	GO:0061053	somite development	copb1	IMP	ZFIN:ZDB-GENO-980202-1281	Zfish	PMID:9007233

Gene Ontology Evidence Code Abbreviations:

EXP Inferred from experiment

IDA Inferred from direct assay

IEP Inferred from expression pattern

IGI Inferred from genetic interaction

IMP Inferred from mutant phenotype

IPI Inferred from physical interaction

HTP Inferred from High Throughput Experiment

HDA Inferred from High Throughput Direct Assay

HMP Inferred from High Throughput Mutant Phenotype

HGI Inferred from High Throughput Genetic Interaction

HEP Inferred from High Throughput Expression Pattern

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 07/05/2024 MGI 6.24

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023. Complete table of the annotations represented in this image is provided below.

Molecular Function

Cellular Component

Biological Process

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.