Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes DBI
  • Mouse genes Dbi
  • Rat genes Dbi
  • Zfish genes dbi
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Dbi

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0030156	benzodiazepine receptor binding	Dbi	IDA		Rat	PMID:6304714|RGD:2316257
Molecular Function	GO:0000062	fatty-acyl-CoA binding	Dbi	IPI	CHEBI:17984	Rat	PMID:11404184|RGD:2316275
Molecular Function	GO:0042802	identical protein binding	DBI	IPI	UniProtKB:P07108	Human	PMID:21079819
Molecular Function	GO:0036042	long-chain fatty acyl-CoA binding	DBI	IDA		Human	PMID:21079819
Molecular Function	GO:0005515	protein binding	Dbi	IPI	RGD:2810	Rat	PMID:14530276|RGD:2316269
Cellular Component	GO:0043292	contractile fiber	Dbi	IDA		Rat	PMID:11812754|RGD:2316272
Cellular Component	GO:0005737	cytoplasm	Dbi	IDA		Rat	PMID:18455725|RGD:2316260
Cellular Component	GO:0005783	endoplasmic reticulum	DBI	IDA		Human	PMID:17953517
Cellular Component	GO:0070062	extracellular exosome	DBI	HDA		Human	PMID:20458337
Cellular Component	GO:0070062	extracellular exosome	DBI	HDA		Human	PMID:23533145
Cellular Component	GO:0005615	extracellular space	Dbi	IDA		Rat	PMID:18512251|RGD:2316258
Cellular Component	GO:0005615	extracellular space	Dbi	IDA		Rat	PMID:3819722|RGD:8554614
Cellular Component	GO:0005794	Golgi apparatus	DBI	IDA		Human	PMID:17953517
Cellular Component	GO:0005739	mitochondrion	Dbi	HDA		Mouse	PMID:14651853
Cellular Component	GO:0005634	nucleus	Dbi	IDA		Rat	PMID:18455725|RGD:2316260
Cellular Component	GO:0005886	plasma membrane	Dbi	IDA		Rat	PMID:18455725|RGD:2316260
Cellular Component	GO:0032994	protein-lipid complex	DBI	IDA		Human	PMID:21079819
Cellular Component	GO:0008021	synaptic vesicle	Dbi	IDA		Rat	PMID:3819722|RGD:8554614
Biological Process	GO:0001662	behavioral fear response	Dbi	IDA		Mouse	PMID:17150371
Biological Process	GO:0007420	brain development	Dbi	IEP		Rat	PMID:10048463|RGD:2316283
Biological Process	GO:0031670	cellular response to nutrient	Dbi	IEP		Rat	PMID:15825833|RGD:2316268
Biological Process	GO:0014009	glial cell proliferation	Dbi	IDA		Rat	PMID:10899945|RGD:2316280
Biological Process	GO:0001942	hair follicle development	Dbi	IMP		Mouse	PMID:16902415
Biological Process	GO:0021670	lateral ventricle development	Dbi	IDA		Mouse	PMID:17150371
Biological Process	GO:0007611	learning or memory	Dbi	IDA		Mouse	PMID:17150371
Biological Process	GO:0060291	long-term synaptic potentiation	Dbi	IDA		Mouse	PMID:17150371
Biological Process	GO:0031999	negative regulation of fatty acid beta-oxidation	Dbi	IDA		Rat	PMID:11485163|RGD:2316274
Biological Process	GO:1903060	negative regulation of protein lipidation	DBI	IDA		Human	PMID:21079819
Biological Process	GO:0030157	pancreatic juice secretion	Dbi	IEP		Rat	PMID:10675361|RGD:2316282
Biological Process	GO:0036151	phosphatidylcholine acyl-chain remodeling	DBI	IDA		Human	PMID:21079819
Biological Process	GO:1905920	positive regulation of CoA-transferase activity	DBI	IDA		Human	PMID:21079819
Biological Process	GO:0046889	positive regulation of lipid biosynthetic process	Dbi	IDA		Rat	PMID:11485163|RGD:2316274
Biological Process	GO:2001140	positive regulation of phospholipid transport	DBI	IDA		Human	PMID:21079819
Biological Process	GO:0051281	positive regulation of release of sequestered calcium ion into cytosol	Dbi	IMP		Rat	PMID:9804683|RGD:2316286
Biological Process	GO:0032228	regulation of synaptic transmission, GABAergic	Dbi	IDA		Rat	PMID:3456171|RGD:8554715
Biological Process	GO:0043588	skin development	Dbi	IMP		Mouse	PMID:16902415
Biological Process	GO:0006641	triglyceride metabolic process	Dbi	IMP		Mouse	PMID:16902415

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern