Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes DDX39B
  • Mouse genes Ddx39b
  • Rat genes Ddx39b
  • Zfish genes ddx39b
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Ddx39b

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0016887	ATP hydrolysis activity	DDX39B	EXP		Human	PMID:20844015
Molecular Function	GO:0008186	ATP-dependent activity, acting on RNA	DDX39B	IDA		Human	PMID:17562711
Molecular Function	GO:0043008	ATP-dependent protein binding	DDX39B	IDA		Human	PMID:18593880
Molecular Function	GO:0042802	identical protein binding	DDX39B	IPI	UniProtKB:Q13838	Human	PMID:14667819
Molecular Function	GO:0042802	identical protein binding	DDX39B	IPI	UniProtKB:Q13838	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	DDX39B	IPI	UniProtKB:Q86V81	Human	PMID:11979277
Molecular Function	GO:0005515	protein binding	DDX39B	IPI	UniProtKB:O00148	Human	PMID:14667819
Molecular Function	GO:0005515	protein binding	DDX39B	IPI	UniProtKB:P82979	Human	PMID:14667819
Molecular Function	GO:0005515	protein binding	DDX39B	IPI	UniProtKB:Q86V81	Human	PMID:14667819
Molecular Function	GO:0005515	protein binding	DDX39B	IPI	UniProtKB:Q9Y3Y2	Human	PMID:14667819
Molecular Function	GO:0005515	protein binding	DDX39B	IPI	UniProtKB:Q86V81	Human	PMID:15047853
Molecular Function	GO:0005515	protein binding	DDX39B	IPI	UniProtKB:Q96FV9	Human	PMID:15870275
Molecular Function	GO:0005515	protein binding	DDX39B	IPI	UniProtKB:Q96QD9	Human	PMID:19836239
Molecular Function	GO:0005515	protein binding	DDX39B	IPI	UniProtKB:Q96QD9	Human	PMID:21814512
Molecular Function	GO:0005515	protein binding	DDX39B	IPI	UniProtKB:P09922	Human	PMID:21859714
Molecular Function	GO:0005515	protein binding	DDX39B	IPI	UniProtKB:P20591	Human	PMID:21859714
Molecular Function	GO:0005515	protein binding	DDX39B	IPI	UniProtKB:Q86V81	Human	PMID:23299939
Molecular Function	GO:0005515	protein binding	DDX39B	IPI	UniProtKB:Q9Y3Y2	Human	PMID:23299939
Molecular Function	GO:0005515	protein binding	DDX39B	IPI	UniProtKB:Q9Y3Y2	Human	PMID:30021884
Molecular Function	GO:0005515	protein binding	DDX39B	IPI	UniProtKB:O00148	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	DDX39B	IPI	UniProtKB:O00560	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	DDX39B	IPI	UniProtKB:P09012	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	DDX39B	IPI	UniProtKB:P26368-2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	DDX39B	IPI	UniProtKB:P78317	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	DDX39B	IPI	UniProtKB:P82979	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	DDX39B	IPI	UniProtKB:Q7KZS0	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	DDX39B	IPI	UniProtKB:Q9P127	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	DDX39B	IPI	UniProtKB:Q9Y3Y2-3	Human	PMID:32296183
Molecular Function	GO:0044877	protein-containing complex binding	Ddx39b	IDA		Rat	PMID:10220587|RGD:10043092
Molecular Function	GO:0003723	RNA binding	DDX39B	HDA		Human	PMID:22658674
Molecular Function	GO:0003723	RNA binding	DDX39B	HDA		Human	PMID:22681889
Molecular Function	GO:0003724	RNA helicase activity	DDX39B	IDA		Human	PMID:17562711
Molecular Function	GO:0003724	RNA helicase activity	DDX39B	IDA		Human	PMID:18593880
Molecular Function	GO:0030621	U4 snRNA binding	DDX39B	IDA		Human	PMID:18593880
Molecular Function	GO:0017070	U6 snRNA binding	DDX39B	IDA		Human	PMID:18593880
Cellular Component	GO:0005737	cytoplasm	DDX39B	IDA		Human	PMID:21859714
Cellular Component	GO:0016363	nuclear matrix	Ddx39b	IDA		Rat	PMID:1618789|RGD:632224
Cellular Component	GO:0016607	nuclear speck	DDX39B	IDA		Human	GO_REF:0000052
Cellular Component	GO:0016607	nuclear speck	Ddx39b	IDA		Mouse	PMID:25145264
Cellular Component	GO:0005634	nucleus	DDX39B	IDA		Human	PMID:21859714
Cellular Component	GO:0032991	protein-containing complex	Ddx39b	IDA		Rat	PMID:10220587|RGD:10043092
Cellular Component	GO:0005681	spliceosomal complex	DDX39B	IDA		Human	PMID:18593880
Cellular Component	GO:0000346	transcription export complex	DDX39B	IDA		Human	PMID:15833825
Cellular Component	GO:0000346	transcription export complex	DDX39B	IDA		Human	PMID:15998806
Cellular Component	GO:0005687	U4 snRNP	DDX39B	IDA		Human	PMID:18593880
Cellular Component	GO:0005688	U6 snRNP	DDX39B	IDA		Human	PMID:18593880
Biological Process	GO:0001889	liver development	Ddx39b	IEP		Rat	PMID:1618789|RGD:632224
Biological Process	GO:0006406	mRNA export from nucleus	DDX39B	IGI	UniProtKB:Q07478	Human	PMID:15047853
Biological Process	GO:0006406	mRNA export from nucleus	DDX39B	IDA		Human	PMID:17190602
Biological Process	GO:0000398	mRNA splicing, via spliceosome	DDX39B	IGI	UniProtKB:Q07478	Human	PMID:15047853
Biological Process	GO:2000002	negative regulation of DNA damage checkpoint	DDX39B	IMP		Human	PMID:22144908
Biological Process	GO:0061051	positive regulation of cell growth involved in cardiac muscle cell development	Ddx39b	IMP		Rat	PMID:20116367|RGD:10401141
Biological Process	GO:2000573	positive regulation of DNA biosynthetic process	Ddx39b	IMP		Rat	PMID:22446327|RGD:10401140
Biological Process	GO:0032786	positive regulation of DNA-templated transcription, elongation	DDX39B	IMP		Human	PMID:22144908
Biological Process	GO:0045727	positive regulation of translation	Ddx39b	IMP		Rat	PMID:20116367|RGD:10401141
Biological Process	GO:1904707	positive regulation of vascular associated smooth muscle cell proliferation	Ddx39b	IMP		Rat	PMID:23246467|RGD:10401139
Biological Process	GO:0010501	RNA secondary structure unwinding	DDX39B	IDA		Human	PMID:18593880
Biological Process	GO:0008380	RNA splicing	DDX39B	IDA		Human	PMID:18593880
Biological Process	GO:0000245	spliceosomal complex assembly	DDX39B	IDA		Human	PMID:18593880
Biological Process	GO:0046784	viral mRNA export from host cell nucleus	DDX39B	IDA		Human	PMID:18974867

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern