Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes DEK
  • Mouse genes Dek
  • Rat genes Dek
  • Zfish genes dek
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Dek

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0042393	histone binding	DEK	IDA		Human	PMID:12140263
Molecular Function	GO:0005515	protein binding	DEK	IPI	UniProtKB:P68400	Human	PMID:22113938
Molecular Function	GO:0005515	protein binding	DEK	IPI	UniProtKB:Q8N954-2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	DEK	IPI	UniProtKB:P68400	Human	PMID:32707033
Molecular Function	GO:0003723	RNA binding	DEK	HDA		Human	PMID:22658674
Molecular Function	GO:0003723	RNA binding	DEK	HDA		Human	PMID:22681889
Cellular Component	GO:0110016	B-WICH complex	DEK	IDA		Human	PMID:16603771
Cellular Component	GO:0043292	contractile fiber	Dek	IDA		Mouse	PMID:22358842
Cellular Component	GO:0005654	nucleoplasm	DEK	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005634	nucleus	DEK	IDA		Human	PMID:21653549
Cellular Component	GO:0005634	nucleus	Dek	IDA		Mouse	PMID:22358842
Biological Process	GO:0044838	cell quiescence	Dek	IMP		Mouse	PMID:22358842
Biological Process	GO:0045945	positive regulation of transcription by RNA polymerase III	DEK	IDA		Human	PMID:16603771
Biological Process	GO:2000779	regulation of double-strand break repair	DEK	IMP		Human	PMID:21653549
Biological Process	GO:2001032	regulation of double-strand break repair via nonhomologous end joining	Dek	IMP	MGI:MGI:3838711	Mouse	PMID:21653549

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern