Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes EBF1
  • Mouse genes Ebf1
  • Rat genes Ebf1
  • Zfish genes ebf1a,ebf1b,ebf3a
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Ebf1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0070742	C2H2 zinc finger domain binding	Ebf1	IPI	RGD:621664	Rat	PMID:9774661|RGD:704357
Molecular Function	GO:0003677	DNA binding	Ebf1	IDA		Mouse	PMID:14594818
Molecular Function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific	Ebf1	IDA		Mouse	MGI:MGI:5572892|PMID:12446773
Molecular Function	GO:0003700	DNA-binding transcription factor activity	Ebf1	IDA		Mouse	PMID:14594818
Molecular Function	GO:0005515	protein binding	EBF1	IPI	UniProtKB:Q8IX15-3	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	EBF1	IPI	UniProtKB:Q8N5M1	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	EBF1	IPI	UniProtKB:Q8N5M1	Human	PMID:25910212
Molecular Function	GO:0005515	protein binding	EBF1	IPI	UniProtKB:P78424	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	EBF1	IPI	UniProtKB:Q8N5M1	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	EBF1	IPI	UniProtKB:Q7Z699	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	Ebf1	IPI	PR:Q8K4J2	Mouse	PMID:12139918
Molecular Function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Ebf1	IDA		Mouse	MGI:MGI:5572892|PMID:12446773
Molecular Function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Ebf1	IDA		Mouse	PMID:22194471
Cellular Component	GO:0005634	nucleus	Ebf1	IDA		Mouse	PMID:22194471
Cellular Component	GO:0005634	nucleus	Ebf1	IDA		Mouse	PMID:14594818
Biological Process	GO:0045893	positive regulation of DNA-templated transcription	Ebf1	IDA		Mouse	PMID:12139918
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	Ebf1	IDA		Mouse	MGI:MGI:5572892|PMID:12446773
Biological Process	GO:0006355	regulation of DNA-templated transcription	Ebf1	IDA		Mouse	PMID:14594818

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern