Comparative GO Graph (mouse, human, rat)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes EBF4
  • Mouse genes Ebf4
  • Rat genes Ebf4
  • Zfish genes
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Ebf4

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003677	DNA binding	Ebf4	IDA		Mouse	PMID:12139918
Molecular Function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific	Ebf4	IDA		Mouse	MGI:MGI:2384470|PMID:12139918
Molecular Function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific	Ebf4	IMP		Mouse	MGI:MGI:2384470|PMID:12139918
Molecular Function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	EBF4	IDA		Human	PMID:35939714
Molecular Function	GO:0140297	DNA-binding transcription factor binding	EBF4	IPI	UniProtKB:P42229	Human	PMID:35939714
Molecular Function	GO:0005515	protein binding	EBF4	IPI	UniProtKB:P27361	Human	PMID:35939714
Molecular Function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	EBF4	IDA		Human	PMID:35939714
Molecular Function	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Ebf4	IMP		Mouse	MGI:MGI:2384470|PMID:12139918
Molecular Function	GO:0008134	transcription factor binding	Ebf4	IPI	PR:O08792	Mouse	PMID:12139918
Molecular Function	GO:0008134	transcription factor binding	Ebf4	IPI	PR:O08791	Mouse	PMID:12139918
Molecular Function	GO:0008134	transcription factor binding	Ebf4	IPI	PR:Q07802	Mouse	PMID:12139918
Cellular Component	GO:0000785	chromatin	EBF4	IDA		Human	PMID:35939714
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	EBF4	IDA		Human	PMID:35939714
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	Ebf4	IDA		Mouse	MGI:MGI:2384470|PMID:12139918
Biological Process	GO:0006355	regulation of DNA-templated transcription	Ebf4	IDA		Mouse	PMID:12139918
Biological Process	GO:0070231	T cell apoptotic process	EBF4	IMP		Human	PMID:35939714

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern