Comparative GO Graph (mouse, human, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes FOXD1
  • Mouse genes Foxd1
  • Rat genes
  • Zfish genes foxd1
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Foxd1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003677	DNA binding	FOXD1	IDA		Human	PMID:7957066
Molecular Function	GO:0003677	DNA binding	Foxd1	IDA		Mouse	PMID:13678594
Molecular Function	GO:0008301	DNA binding, bending	FOXD1	IDA		Human	PMID:7957066
Molecular Function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific	Foxd1	IDA		Mouse	MGI:MGI:2675756|PMID:13678594
Molecular Function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Foxd1	IDA		Mouse	MGI:MGI:2675756|PMID:13678594
Molecular Function	GO:0043565	sequence-specific DNA binding	FOXD1	IDA		Human	PMID:7957066
Molecular Function	GO:0043565	sequence-specific DNA binding	Foxd1	IDA		Mouse	PMID:13678594
Biological Process	GO:0007411	axon guidance	Foxd1	IMP	MGI:MGI:2180362	Mouse	PMID:15509772
Biological Process	GO:0001658	branching involved in ureteric bud morphogenesis	Foxd1	IDA		Mouse	PMID:13678594
Biological Process	GO:0060070	canonical Wnt signaling pathway	Foxd1	IMP	MGI:MGI:4359653	Mouse	PMID:32868762
Biological Process	GO:0060678	dichotomous subdivision of terminal units involved in ureteric bud branching	Foxd1	IMP		Mouse	MGI:MGI:3525902|PMID:15634693
Biological Process	GO:0001822	kidney development	Foxd1	IMP	MGI:MGI:2180362	Mouse	PMID:8666231
Biological Process	GO:0032275	luteinizing hormone secretion	Foxd1	IMP		Mouse	MGI:MGI:5484943|PMID:23284914
Biological Process	GO:0072213	metanephric capsule development	Foxd1	IMP		Mouse	MGI:MGI:3525902|PMID:15634693
Biological Process	GO:0072267	metanephric capsule specification	Foxd1	IMP		Mouse	MGI:MGI:3525902|PMID:15634693
Biological Process	GO:0072210	metanephric nephron development	Foxd1	IMP		Mouse	MGI:MGI:3525902|PMID:15634693
Biological Process	GO:0045892	negative regulation of DNA-templated transcription	Foxd1	IMP		Mouse	MGI:MGI:3525902|PMID:15634693
Biological Process	GO:0072076	nephrogenic mesenchyme development	Foxd1	IMP		Mouse	MGI:MGI:3525902|PMID:15634693
Biological Process	GO:0072268	pattern specification involved in metanephros development	Foxd1	IMP		Mouse	MGI:MGI:3525902|PMID:15634693
Biological Process	GO:0030513	positive regulation of BMP signaling pathway	Foxd1	IMP		Mouse	MGI:MGI:3525902|PMID:15634693
Biological Process	GO:0010628	positive regulation of gene expression	Foxd1	IMP		Mouse	MGI:MGI:3525902|PMID:15634693
Biological Process	GO:0090184	positive regulation of kidney development	Foxd1	IMP		Mouse	MGI:MGI:3525902|PMID:15634693
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	Foxd1	IDA		Mouse	PMID:13678594

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern