Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes FUBP3
  • Mouse genes Fubp3
  • Rat genes Fubp3
  • Zfish genes fubp3
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Fubp3

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	FUBP3	IPI	UniProtKB:Q96PU8	Human	PMID:16713569
Molecular Function	GO:0005515	protein binding	FUBP3	IPI	UniProtKB:Q96PU8	Human	PMID:25416956
Molecular Function	GO:0003723	RNA binding	FUBP3	HDA		Human	PMID:22658674
Molecular Function	GO:0003723	RNA binding	FUBP3	HDA		Human	PMID:22681889
Molecular Function	GO:0003697	single-stranded DNA binding	FUBP3	IDA		Human	PMID:8940189
Cellular Component	GO:0005737	cytoplasm	FUBP3	IDA		Human	PMID:19087307
Cellular Component	GO:0005737	cytoplasm	Fubp3	IDA		Rat	PMID:23121659|RGD:12792285
Cellular Component	GO:0043198	dendritic shaft	Fubp3	IDA		Rat	PMID:23121659|RGD:12792285
Cellular Component	GO:0016020	membrane	FUBP3	HDA		Human	PMID:19946888
Cellular Component	GO:0043025	neuronal cell body	Fubp3	IDA		Rat	PMID:23121659|RGD:12792285
Cellular Component	GO:0005654	nucleoplasm	Fubp3	IDA		Rat	PMID:23121659|RGD:12792285
Cellular Component	GO:0005634	nucleus	FUBP3	IDA		Human	PMID:19087307
Cellular Component	GO:0005844	polysome	Fubp3	IDA		Rat	PMID:23121659|RGD:12792285
Cellular Component	GO:0005840	ribosome	Fubp3	IDA		Rat	PMID:23121659|RGD:12792285
Biological Process	GO:0006351	DNA-templated transcription	FUBP3	IDA		Human	PMID:8940189
Biological Process	GO:0008298	intracellular mRNA localization	Fubp3	IMP		Rat	PMID:23121659|RGD:12792285
Biological Process	GO:0045893	positive regulation of DNA-templated transcription	FUBP3	IDA		Human	PMID:8940189
Biological Process	GO:0010628	positive regulation of gene expression	FUBP3	IDA		Human	PMID:19087307
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	FUBP3	IDA		Human	PMID:8940183
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	FUBP3	IDA		Human	PMID:8940189

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern