Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes GATAD2B
  • Mouse genes Gatad2b
  • Rat genes Gatad2b
  • Zfish genes gatad2b
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Gatad2b

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0031492	nucleosomal DNA binding	GATAD2B	HDA		Human	PMID:16217013
Molecular Function	GO:0005515	protein binding	GATAD2B	IPI	UniProtKB:O43741	Human	PMID:24722188
Molecular Function	GO:0005515	protein binding	GATAD2B	IPI	UniProtKB:O95983	Human	PMID:25123934
Molecular Function	GO:0005515	protein binding	GATAD2B	IPI	UniProtKB:Q17R98	Human	PMID:25150861
Molecular Function	GO:0005515	protein binding	GATAD2B	IPI	UniProtKB:O43741	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	GATAD2B	IPI	UniProtKB:O95983	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	GATAD2B	IPI	UniProtKB:P14373	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	GATAD2B	IPI	UniProtKB:Q08379	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	GATAD2B	IPI	UniProtKB:Q13077	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	GATAD2B	IPI	UniProtKB:Q13137	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	GATAD2B	IPI	UniProtKB:Q8IYF3	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	GATAD2B	IPI	UniProtKB:Q8N6Y0	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	GATAD2B	IPI	UniProtKB:Q8NHQ1	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	GATAD2B	IPI	UniProtKB:Q96KN7	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	GATAD2B	IPI	UniProtKB:Q03468	Human	PMID:26030138
Molecular Function	GO:0005515	protein binding	GATAD2B	IPI	UniProtKB:O95365	Human	PMID:26816381
Molecular Function	GO:0005515	protein binding	GATAD2B	IPI	UniProtKB:Q9NRI5	Human	PMID:29961565
Molecular Function	GO:0005515	protein binding	GATAD2B	IPI	UniProtKB:Q9NRI5	Human	PMID:31413325
Molecular Function	GO:0005515	protein binding	GATAD2B	IPI	UniProtKB:Q13077	Human	PMID:31515488
Molecular Function	GO:0005515	protein binding	GATAD2B	IPI	UniProtKB:P0C264	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	GATAD2B	IPI	UniProtKB:P55273	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	GATAD2B	IPI	UniProtKB:Q14192	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	GATAD2B	IPI	UniProtKB:Q86UR1-2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	GATAD2B	IPI	UniProtKB:Q8N5A5-2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	GATAD2B	IPI	UniProtKB:Q9NPG2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	GATAD2B	IPI	UniProtKB:Q9Y4H4	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	GATAD2B	IPI	UniProtKB:Q9Y5B8	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	Gatad2b	IPI	UniProtKB:P12813	Mouse	MGI:MGI:5644023|PMID:19321449
Molecular Function	GO:0005515	protein binding	Gatad2b	IPI	UniProtKB:A2A8L1	Mouse	MGI:MGI:5559665|PMID:21931736
Cellular Component	GO:0000785	chromatin	GATAD2B	HDA		Human	PMID:16217013
Cellular Component	GO:0000781	chromosome, telomeric region	GATAD2B	IDA		Human	PMID:25150861
Cellular Component	GO:0005654	nucleoplasm	GATAD2B	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005634	nucleus	GATAD2B	IDA		Human	PMID:27732854
Cellular Component	GO:0005634	nucleus	GATAD2B	IDA		Human	PMID:28977666
Cellular Component	GO:0005634	nucleus	GATAD2B	IDA		Human	PMID:33283408
Cellular Component	GO:0016581	NuRD complex	GATAD2B	IDA		Human	PMID:33283408
Cellular Component	GO:0032991	protein-containing complex	GATAD2B	HDA		Human	PMID:16217013
Biological Process	GO:0006338	chromatin remodeling	GATAD2B	HDA		Human	PMID:16217013
Biological Process	GO:0006338	chromatin remodeling	GATAD2B	IDA		Human	PMID:9790534
Biological Process	GO:0016575	histone deacetylation	GATAD2B	IDA		Human	PMID:10444591
Biological Process	GO:0045879	negative regulation of smoothened signaling pathway	gatad2b	IMP	ZFIN:ZDB-MRPHLNO-150318-3	Zfish	PMID:25403183

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern