Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes GBP6
  • Mouse genes Gbp6
  • Rat genes Gbp6,Gbp6-ps1
  • Zfish genes gbp1,gbp2,gbp3,si:ch211-209n20.1
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Gbp6

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Cellular Component	GO:0031410	cytoplasmic vesicle	Gbp6	IDA		Mouse	PMID:18025219
Cellular Component	GO:0031410	cytoplasmic vesicle	Gbp6	IDA		Mouse	PMID:21551061
Cellular Component	GO:0070062	extracellular exosome	GBP6	HDA		Human	PMID:19199708
Cellular Component	GO:0020005	symbiont-containing vacuole membrane	Gbp6	IDA		Mouse	PMID:18025219
Biological Process	GO:0044406	adhesion of symbiont to host	Gbp6	IDA		Mouse	PMID:18025219
Biological Process	GO:0035458	cellular response to interferon-beta	Gbp6	IDA		Mouse	MGI:MGI:4412460|PMID:18025219
Biological Process	GO:0035458	cellular response to interferon-beta	Gbp6	IDA		Mouse	PMID:19158679
Biological Process	GO:0071222	cellular response to lipopolysaccharide	Gbp6	IDA		Mouse	PMID:18025219
Biological Process	GO:0071346	cellular response to type II interferon	Gbp6	IDA		Mouse	PMID:18025219
Biological Process	GO:0050830	defense response to Gram-positive bacterium	Gbp6	IMP		Mouse	PMID:21551061
Biological Process	GO:0050830	defense response to Gram-positive bacterium	Gbp6	IDA		Mouse	PMID:18025219
Biological Process	GO:0042832	defense response to protozoan	Gbp6	IDA		Mouse	PMID:18025219
Biological Process	GO:0009617	response to bacterium	Gbp6	IEP		Mouse	PMID:23012479

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern