Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes GC
  • Mouse genes Gc
  • Rat genes Gc
  • Zfish genes gc
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Gc

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003779	actin binding	GC	IPI	UniProtKB:P62740	Human	PMID:12119014
Molecular Function	GO:1902118	calcidiol binding	GC	IDA		Human	PMID:11799400
Molecular Function	GO:0005515	protein binding	Gc	IPI	UniProtKB:P68135|UniProtKB:P00639	Rat	PMID:8660573|RGD:2315530
Molecular Function	GO:0005499	vitamin D binding	Gc	IDA		Rat	PMID:49052|RGD:2315532
Cellular Component	GO:0030424	axon	Gc	IDA		Rat	PMID:19034485|RGD:2315499
Cellular Component	GO:0072562	blood microparticle	GC	HDA		Human	PMID:22516433
Cellular Component	GO:0005829	cytosol	Gc	IDA		Rat	PMID:6321624|RGD:2315533
Cellular Component	GO:0070062	extracellular exosome	GC	HDA		Human	PMID:23533145
Cellular Component	GO:0005615	extracellular space	GC	HDA		Human	PMID:16502470
Cellular Component	GO:0005615	extracellular space	Gc	IDA		Rat	PMID:8660573|RGD:2315530
Cellular Component	GO:0048471	perinuclear region of cytoplasm	Gc	IDA		Rat	PMID:19034485|RGD:2315499
Biological Process	GO:0007565	female pregnancy	Gc	IEP		Rat	PMID:217634|RGD:2315536
Biological Process	GO:0007595	lactation	Gc	IEP		Rat	PMID:217634|RGD:2315536
Biological Process	GO:0032355	response to estradiol	Gc	IEP		Rat	PMID:6321624|RGD:2315533
Biological Process	GO:0031667	response to nutrient levels	Gc	IEP		Rat	PMID:12144717|RGD:2315500
Biological Process	GO:0048545	response to steroid hormone	Gc	IEP		Rat	PMID:217634|RGD:2315536
Biological Process	GO:0042359	vitamin D metabolic process	Gc	IDA		Mouse	PMID:15225763

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern