Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes GPATCH3
  • Mouse genes Gpatch3
  • Rat genes Gpatch3
  • Zfish genes gpatch3
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Gpatch3

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	GPATCH3	IPI	UniProtKB:Q7Z434	Human	PMID:28414768
Cellular Component	GO:0005737	cytoplasm	GPATCH3	IDA		Human	PMID:28397860
Cellular Component	GO:0005829	cytosol	GPATCH3	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005654	nucleoplasm	GPATCH3	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005634	nucleus	GPATCH3	IDA		Human	PMID:28397860
Biological Process	GO:0043010	camera-type eye development	gpatch3	IMP	ZFIN:ZDB-MRPHLNO-170725-1	Zfish	PMID:28397860
Biological Process	GO:0043010	camera-type eye development	gpatch3	IMP	ZFIN:ZDB-MRPHLNO-170725-3	Zfish	PMID:28397860
Biological Process	GO:0043010	camera-type eye development	gpatch3	IMP	ZFIN:ZDB-MRPHLNO-170725-2	Zfish	PMID:28397860
Biological Process	GO:1904888	cranial skeletal system development	gpatch3	IMP	ZFIN:ZDB-MRPHLNO-170725-3	Zfish	PMID:28397860
Biological Process	GO:1904888	cranial skeletal system development	gpatch3	IMP	ZFIN:ZDB-MRPHLNO-170725-2	Zfish	PMID:28397860
Biological Process	GO:1904888	cranial skeletal system development	gpatch3	IMP	ZFIN:ZDB-MRPHLNO-170725-1	Zfish	PMID:28397860
Biological Process	GO:0039536	negative regulation of RIG-I signaling pathway	GPATCH3	IMP		Human	PMID:28414768
Biological Process	GO:0032480	negative regulation of type I interferon production	GPATCH3	IMP		Human	PMID:28414768
Biological Process	GO:0045893	positive regulation of DNA-templated transcription	GPATCH3	IDA		Human	PMID:28397860

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern