Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes GPC6
  • Mouse genes Gpc6
  • Rat genes Gpc6
  • Zfish genes gpc6a,gpc6b
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Gpc6

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	GPC6	IPI	UniProtKB:P51654,UniProtKB:Q8N158,UniProtKB:Q96SN8	Human	PMID:29162697
Cellular Component	GO:0098978	glutamatergic synapse	Gpc6	IDA		Rat	PMID:22722203|RGD:13702461
Cellular Component	GO:0098978	glutamatergic synapse	Gpc6	IMP		Rat	PMID:22722203|RGD:13702461
Cellular Component	GO:0005634	nucleus	GPC6	HDA		Human	PMID:21630459
Cellular Component	GO:0045202	synapse	Gpc6	IDA		Mouse	PMID:16452087
Cellular Component	GO:0045202	synapse	Gpc6	EXP		Mouse	PMID:16452087
Biological Process	GO:0016477	cell migration	GPC6	IDA		Human	PMID:21871017
Biological Process	GO:0098696	regulation of neurotransmitter receptor localization to postsynaptic specialization membrane	Gpc6	IDA		Rat	PMID:22722203|RGD:13702461
Biological Process	GO:0098696	regulation of neurotransmitter receptor localization to postsynaptic specialization membrane	Gpc6	IMP		Rat	PMID:22722203|RGD:13702461

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern