Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes GTPBP1
  • Mouse genes Gtpbp1
  • Rat genes Gtpbp1
  • Zfish genes gtpbp1,gtpbp1l
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Gtpbp1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003924	GTPase activity	Gtpbp1	IDA		Rat	PMID:21515746|RGD:8553842
Molecular Function	GO:0005515	protein binding	GTPBP1	IPI	UniProtKB:Q9BPX7	Human	PMID:32296183
Molecular Function	GO:0003723	RNA binding	GTPBP1	HDA		Human	PMID:22658674
Cellular Component	GO:0000177	cytoplasmic exosome (RNase complex)	Gtpbp1	IDA		Rat	PMID:21515746|RGD:8553842
Cellular Component	GO:0005829	cytosol	Gtpbp1	IDA		Rat	PMID:21515746|RGD:8553842
Cellular Component	GO:0016020	membrane	GTPBP1	HDA		Human	PMID:19946888
Biological Process	GO:0046039	GTP metabolic process	Gtpbp1	IDA		Rat	PMID:21515746|RGD:8553842
Biological Process	GO:0061014	positive regulation of mRNA catabolic process	Gtpbp1	IDA		Rat	PMID:21515746|RGD:8553842

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern