Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes H2BC1
  • Mouse genes H2bc1
  • Rat genes H2bc1
  • Zfish genes hist2h2l
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set H2bc1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003677	DNA binding	H2bc1	IDA		Rat	PMID:3666307|RGD:634433
Molecular Function	GO:0042393	histone binding	H2bc1	IPI	UniProtKB:Q9CQ70	Mouse	MGI:MGI:5897488|PMID:28366643
Molecular Function	GO:0042393	histone binding	H2bc1	IPI	PR:Q9CQ70	Mouse	PMID:17261847
Molecular Function	GO:0042393	histone binding	H2bc1	IDA		Mouse	PMID:17261847
Cellular Component	GO:0009986	cell surface	H2bc1	IDA		Mouse	PMID:17690254
Cellular Component	GO:0000785	chromatin	hist2h2l	IDA		Zfish	PMID:22155959
Cellular Component	GO:0000781	chromosome, telomeric region	H2BC1	HDA		Human	PMID:19135898
Cellular Component	GO:0044815	DNA packaging complex	H2bc1	IDA		Mouse	PMID:17261847
Cellular Component	GO:0001674	female germ cell nucleus	H2bc1	IDA		Mouse	PMID:24506885
Cellular Component	GO:0000786	nucleosome	H2BC1	IDA		Human	PMID:24699735
Cellular Component	GO:0000786	nucleosome	H2bc1	IDA		Mouse	MGI:MGI:5502464|PMID:23884607
Cellular Component	GO:0000786	nucleosome	H2bc1	IDA		Mouse	MGI:MGI:5897488|PMID:28366643
Cellular Component	GO:0000786	nucleosome	H2bc1	IDA		Mouse	PMID:17261847
Cellular Component	GO:0005634	nucleus	H2BC1	HDA		Human	PMID:21630459
Cellular Component	GO:0005634	nucleus	H2bc1	IDA		Mouse	PMID:17261847
Biological Process	GO:0071229	cellular response to acid chemical	H2bc1	IDA		Mouse	PMID:17690254
Biological Process	GO:0006325	chromatin organization	H2bc1	IDA		Mouse	PMID:24506885
Biological Process	GO:0051276	chromosome organization	H2bc1	IDA		Mouse	PMID:17261847
Biological Process	GO:0006954	inflammatory response	H2bc1	IMP		Mouse	PMID:17690254
Biological Process	GO:0071674	mononuclear cell migration	H2bc1	IMP		Mouse	PMID:17690254
Biological Process	GO:0006334	nucleosome assembly	H2BC1	IDA		Human	PMID:24699735
Biological Process	GO:0006334	nucleosome assembly	H2bc1	IMP		Mouse	MGI:MGI:5502464|PMID:23884607
Biological Process	GO:0006334	nucleosome assembly	H2bc1	IDA		Mouse	PMID:17261847
Biological Process	GO:0006337	nucleosome disassembly	H2bc1	IMP		Mouse	MGI:MGI:5502464|PMID:23884607
Biological Process	GO:0031639	plasminogen activation	H2bc1	IMP		Mouse	PMID:17690254
Biological Process	GO:0051099	positive regulation of binding	H2bc1	IMP		Mouse	PMID:17690254
Biological Process	GO:0035092	sperm DNA condensation	H2bc1	IMP		Mouse	MGI:MGI:5502464|PMID:23884607

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern