Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes H3C11,H3C13,H3C14,H3C15
  • Mouse genes H3c6
  • Rat genes H3c13,Hist2h3c2,LOC102548682,LOC102549173
  • Zfish genes hist2h3c,si:ch73-36p18.2,si:dkey-108k21.25,si:dkey-261m9.8,zgc:113983,zgc:162611
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set H3c6

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003677	DNA binding	H3c6	IDA		Mouse	PMID:23798425
Molecular Function	GO:0005515	protein binding	H3C13	IPI	UniProtKB:P02545	Human	PMID:20580717
Molecular Function	GO:0005515	protein binding	H3C13	IPI	UniProtKB:P02545-6	Human	PMID:20580717
Molecular Function	GO:0005515	protein binding	H3C13	IPI	UniProtKB:Q12830-4	Human	PMID:21596426
Molecular Function	GO:0005515	protein binding	H3C13	IPI	UniProtKB:Q13111	Human	PMID:23075851
Molecular Function	GO:0005515	protein binding	H3C13	IPI	UniProtKB:Q9UER7-1	Human	PMID:23075851
Molecular Function	GO:0005515	protein binding	H3C13	IPI	UniProtKB:P62805	Human	PMID:26167883
Molecular Function	GO:0005515	protein binding	H3C13	IPI	UniProtKB:P62805	Human	PMID:30021884
Molecular Function	GO:0005515	protein binding	H3C13	IPI	UniProtKB:Q16695	Human	PMID:30021884
Molecular Function	GO:0005515	protein binding	H3C13	IPI	UniProtKB:P49321-2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	H3C13	IPI	UniProtKB:P09172	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	H3C13	IPI	UniProtKB:P14136	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	H3C13	IPI	UniProtKB:P19404	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	H3C13	IPI	UniProtKB:P29474	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	H3C13	IPI	UniProtKB:P37840	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	H3C13	IPI	UniProtKB:P42858	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	H3C13	IPI	UniProtKB:Q8WXH2	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	H3C13	IPI	UniProtKB:Q96CV9	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	H3C13	IPI	UniProtKB:Q9UBB4	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	H3C13	IPI	UniProtKB:Q8WXX5	Human	PMID:33857403
Molecular Function	GO:0005515	protein binding	H3c6	IPI	UniProtKB:P20263	Mouse	PMID:23798425
Molecular Function	GO:0005515	protein binding	H3c6	IPI	UniProtKB:Q80Z64	Mouse	PMID:23798425
Cellular Component	GO:0000785	chromatin	H3c6	IDA		Mouse	PMID:23798425
Cellular Component	GO:0000785	chromatin	H3c6	IDA		Mouse	PMID:20676102
Cellular Component	GO:0070062	extracellular exosome	H3C13	HDA		Human	PMID:19199708
Cellular Component	GO:0070062	extracellular exosome	H3C13	HDA		Human	PMID:20458337
Cellular Component	GO:0000786	nucleosome	H3C13	IPI		Human	PMID:26694698
Cellular Component	GO:0000786	nucleosome	H3C13	IDA		Human	PMID:21636898
Cellular Component	GO:0000786	nucleosome	H3C13	IDA		Human	PMID:25615412
Cellular Component	GO:0005634	nucleus	H3C13	HDA		Human	PMID:21630459
Cellular Component	GO:0005634	nucleus	H3C13	IDA		Human	PMID:21636898
Cellular Component	GO:0005634	nucleus	H3c6	IPI	UniProtKB:P20263	Mouse	PMID:23798425
Cellular Component	GO:0005634	nucleus	H3c6	IPI	UniProtKB:Q80Z64	Mouse	PMID:23798425
Biological Process	GO:0010467	gene expression	H3c6	IMP		Mouse	PMID:23798425
Biological Process	GO:0006334	nucleosome assembly	H3C13	IDA		Human	PMID:21636898
Biological Process	GO:0006334	nucleosome assembly	H3C13	IDA		Human	PMID:25615412

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern