Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes H3-3A,H3-3B
  • Mouse genes H3f3b
  • Rat genes H3f3a,H3f3b
  • Zfish genes h3f3a,h3f3b.1,h3f3c,h3f3d,si:ch1073-429i10.3
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set H3f3b

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0031492	nucleosomal DNA binding	H3-3A	IDA		Human	PMID:19633671
Molecular Function	GO:0005515	protein binding	H3-3A	IPI	UniProtKB:Q9VK33	Human	PMID:19494831
Molecular Function	GO:0005515	protein binding	H3-3A	IPI	UniProtKB:P45973	Human	PMID:19834512
Molecular Function	GO:0005515	protein binding	H3-3A	IPI	UniProtKB:Q9Y6K1	Human	PMID:19834512
Molecular Function	GO:0005515	protein binding	H3-3A	IPI	UniProtKB:Q61687	Human	PMID:20110566
Molecular Function	GO:0005515	protein binding	H3-3A	IPI	UniProtKB:Q9UER7	Human	PMID:20211137
Molecular Function	GO:0005515	protein binding	H3-3A	IPI	UniProtKB:Q8IZL8	Human	PMID:20448663
Molecular Function	GO:0005515	protein binding	H3-3A	IPI	UniProtKB:Q9UER7	Human	PMID:20504901
Molecular Function	GO:0005515	protein binding	H3-3A	IPI	UniProtKB:Q9UER7	Human	PMID:20651253
Molecular Function	GO:0005515	protein binding	H3-3A	IPI	UniProtKB:Q5VWG9	Human	PMID:20953165
Molecular Function	GO:0005515	protein binding	H3-3A	IPI	UniProtKB:P62805	Human	PMID:23075851
Molecular Function	GO:0005515	protein binding	H3-3A	IPI	UniProtKB:Q13111	Human	PMID:23075851
Molecular Function	GO:0005515	protein binding	H3-3A	IPI	UniProtKB:Q9NVP2	Human	PMID:23075851
Molecular Function	GO:0005515	protein binding	H3-3A	IPI	UniProtKB:Q9UER7-1	Human	PMID:23075851
Molecular Function	GO:0005515	protein binding	H3-3A	IPI	UniProtKB:P62805	Human	PMID:23142979
Molecular Function	GO:0005515	protein binding	H3-3A	IPI	UniProtKB:Q9UER7-1	Human	PMID:23142979
Molecular Function	GO:0005515	protein binding	H3-3A	IPI	UniProtKB:P62805	Human	PMID:24183680
Molecular Function	GO:0005515	protein binding	H3-3A	IPI	UniProtKB:Q9UER7	Human	PMID:24209620
Molecular Function	GO:0005515	protein binding	H3-3A	IPI	UniProtKB:Q8R5C8	Human	PMID:24590075
Molecular Function	GO:0005515	protein binding	H3-3A	IPI	UniProtKB:Q9UER7	Human	PMID:24981860
Molecular Function	GO:0005515	protein binding	H3-3A	IPI	UniProtKB:P49321-2	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	H3-3A	IPI	UniProtKB:P62805	Human	PMID:26167883
Molecular Function	GO:0005515	protein binding	H3-3A	IPI	UniProtKB:Q9NVP2	Human	PMID:26167883
Molecular Function	GO:0005515	protein binding	H3-3A	IPI	UniProtKB:P55197	Human	PMID:26439302
Molecular Function	GO:0005515	protein binding	H3-3A	IPI	UniProtKB:P55198	Human	PMID:26439302
Molecular Function	GO:0005515	protein binding	H3-3A	IPI	UniProtKB:Q9UER7	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	H3-3A	IPI	UniProtKB:Q8WXX5	Human	PMID:33857403
Molecular Function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	H3-3A	IDA		Human	PMID:19633671
Molecular Function	GO:0000979	RNA polymerase II core promoter sequence-specific DNA binding	H3-3A	IDA		Human	PMID:19633671
Molecular Function	GO:0030527	structural constituent of chromatin	H3-3A	IDA		Human	PMID:14718166
Cellular Component	GO:0000781	chromosome, telomeric region	H3-3A	IDA		Human	PMID:20110566
Cellular Component	GO:0070062	extracellular exosome	H3-3A	HDA		Human	PMID:20458337
Cellular Component	GO:0000786	nucleosome	H3-3A	IDA		Human	PMID:14718166
Cellular Component	GO:0000786	nucleosome	H3-3A	IDA		Human	PMID:19633671
Cellular Component	GO:0000786	nucleosome	H3-3A	IDA		Human	PMID:21636898
Cellular Component	GO:0000786	nucleosome	H3-3A	IDA		Human	PMID:25615412
Cellular Component	GO:0000786	nucleosome	h3f3a	IDA		Zfish	PMID:23028350
Cellular Component	GO:0005634	nucleus	H3-3A	HDA		Human	PMID:21630459
Cellular Component	GO:0005634	nucleus	H3-3A	IDA		Human	PMID:21636898
Cellular Component	GO:0005634	nucleus	H3-3A	IMP		Human	PMID:34876591
Cellular Component	GO:0005634	nucleus	H3f3b	IDA		Mouse	PMID:23570311
Cellular Component	GO:0032991	protein-containing complex	H3-3A	IDA		Human	PMID:14718166
Biological Process	GO:0007420	brain development	H3f3b	IEP		Rat	PMID:7877725|RGD:632914
Biological Process	GO:0008283	cell population proliferation	H3f3b	IGI	MGI:MGI:1097686	Mouse	PMID:26159997
Biological Process	GO:0007566	embryo implantation	H3f3b	IMP	MGI:MGI:5474378	Mouse	PMID:7534202
Biological Process	GO:0008584	male gonad development	H3f3b	IMP	MGI:MGI:5474378	Mouse	PMID:25675407
Biological Process	GO:0035264	multicellular organism growth	H3f3b	IMP	MGI:MGI:5474378	Mouse	PMID:25675407
Biological Process	GO:0042692	muscle cell differentiation	H3f3b	IGI	MGI:MGI:99430	Mouse	PMID:22705305
Biological Process	GO:0042692	muscle cell differentiation	H3f3b	IGI	MGI:MGI:1097686	Mouse	PMID:22705305
Biological Process	GO:0042692	muscle cell differentiation	H3f3b	IGI	MGI:MGI:1913653	Mouse	PMID:22705305
Biological Process	GO:1902340	negative regulation of chromosome condensation	H3f3b	IGI	MGI:MGI:1097686	Mouse	PMID:23903189
Biological Process	GO:0006334	nucleosome assembly	H3-3A	IDA		Human	PMID:21636898
Biological Process	GO:0006334	nucleosome assembly	H3-3A	IMP		Human	PMID:25615412
Biological Process	GO:0006997	nucleus organization	H3f3b	IMP	MGI:MGI:5474462	Mouse	PMID:23570311
Biological Process	GO:0048477	oogenesis	H3f3b	IGI	MGI:MGI:1097686	Mouse	PMID:25675407
Biological Process	GO:0001649	osteoblast differentiation	H3f3b	IGI	MGI:MGI:1097686	Mouse	PMID:22705305
Biological Process	GO:0001649	osteoblast differentiation	H3f3b	IGI	MGI:MGI:99430	Mouse	PMID:22705305
Biological Process	GO:0001649	osteoblast differentiation	H3f3b	IGI	MGI:MGI:1913653	Mouse	PMID:22705305
Biological Process	GO:0031508	pericentric heterochromatin formation	H3f3b	IGI	MGI:MGI:1097686	Mouse	PMID:26159997
Biological Process	GO:0030307	positive regulation of cell growth	H3-3A	IMP		Human	PMID:21274551
Biological Process	GO:0090230	regulation of centromere complex assembly	H3f3b	IMP	MGI:MGI:5474462	Mouse	PMID:23570311
Biological Process	GO:0009725	response to hormone	H3f3b	IEP		Rat	PMID:8587656|RGD:2316574
Biological Process	GO:0007338	single fertilization	H3f3b	IMP	MGI:MGI:5474378	Mouse	PMID:25675407
Biological Process	GO:0007286	spermatid development	H3f3b	IMP	MGI:MGI:5474378	Mouse	PMID:25675407
Biological Process	GO:0007283	spermatogenesis	H3f3b	IMP	MGI:MGI:5474378	Mouse	PMID:25675407
Biological Process	GO:0031509	subtelomeric heterochromatin formation	H3f3b	IGI	MGI:MGI:1097686	Mouse	PMID:26159997

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern