Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes HINFP
  • Mouse genes Hinfp
  • Rat genes Hinfp
  • Zfish genes hinfp
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Hinfp

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003682	chromatin binding	Hinfp	IDA		Mouse	PMID:17767158
Molecular Function	GO:0003677	DNA binding	HINFP	IDA		Human	PMID:18850719
Molecular Function	GO:0003677	DNA binding	HINFP	IDA		Human	PMID:9540062
Molecular Function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific	HINFP	IDA		Human	PMID:18850719
Molecular Function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific	HINFP	IDA		Human	PMID:19170105
Molecular Function	GO:0003700	DNA-binding transcription factor activity	HINFP	IMP		Human	PMID:9540062
Molecular Function	GO:0003700	DNA-binding transcription factor activity	Hinfp	IMP		Mouse	MGI:MGI:3851835|PMID:19590016
Molecular Function	GO:0001227	DNA-binding transcription repressor activity, RNA polymerase II-specific	Hinfp	IDA		Mouse	MGI:MGI:5605953|PMID:14752047
Molecular Function	GO:0019899	enzyme binding	HINFP	IPI	UniProtKB:Q13547	Human	PMID:11553631
Molecular Function	GO:0042393	histone binding	HINFP	IPI	UniProtKB:P62805	Human	PMID:14585971
Molecular Function	GO:0042393	histone binding	HINFP	IPI	UniProtKB:P62805	Human	PMID:9540062
Molecular Function	GO:0005515	protein binding	HINFP	IPI	UniProtKB:Q9UBB5	Human	PMID:11553631
Molecular Function	GO:0005515	protein binding	HINFP	IPI	UniProtKB:Q14207	Human	PMID:15988025
Molecular Function	GO:0005515	protein binding	HINFP	IPI	UniProtKB:A8CG34	Human	PMID:17577209
Molecular Function	GO:0005515	protein binding	HINFP	IPI	UniProtKB:A9UHW6	Human	PMID:17577209
Molecular Function	GO:0005515	protein binding	HINFP	IPI	UniProtKB:O43257	Human	PMID:17577209
Molecular Function	GO:0005515	protein binding	HINFP	IPI	UniProtKB:P15170	Human	PMID:17577209
Molecular Function	GO:0005515	protein binding	HINFP	IPI	UniProtKB:P17535	Human	PMID:17577209
Molecular Function	GO:0005515	protein binding	HINFP	IPI	UniProtKB:P46013	Human	PMID:17577209
Molecular Function	GO:0005515	protein binding	HINFP	IPI	UniProtKB:P54259	Human	PMID:17577209
Molecular Function	GO:0005515	protein binding	HINFP	IPI	UniProtKB:P62995	Human	PMID:17577209
Molecular Function	GO:0005515	protein binding	HINFP	IPI	UniProtKB:Q01081	Human	PMID:17577209
Molecular Function	GO:0005515	protein binding	HINFP	IPI	UniProtKB:Q04726	Human	PMID:17577209
Molecular Function	GO:0005515	protein binding	HINFP	IPI	UniProtKB:Q14676	Human	PMID:17577209
Molecular Function	GO:0005515	protein binding	HINFP	IPI	UniProtKB:Q15029	Human	PMID:17577209
Molecular Function	GO:0005515	protein binding	HINFP	IPI	UniProtKB:Q5T8P6	Human	PMID:17577209
Molecular Function	GO:0005515	protein binding	HINFP	IPI	UniProtKB:Q6KC79	Human	PMID:17577209
Molecular Function	GO:0005515	protein binding	HINFP	IPI	UniProtKB:Q8N8U2	Human	PMID:17577209
Molecular Function	GO:0005515	protein binding	HINFP	IPI	UniProtKB:Q96CM3	Human	PMID:17577209
Molecular Function	GO:0005515	protein binding	HINFP	IPI	UniProtKB:Q96DX7	Human	PMID:17577209
Molecular Function	GO:0005515	protein binding	HINFP	IPI	UniProtKB:Q96EB1	Human	PMID:17577209
Molecular Function	GO:0005515	protein binding	HINFP	IPI	UniProtKB:Q96I25	Human	PMID:17577209
Molecular Function	GO:0005515	protein binding	HINFP	IPI	UniProtKB:Q9BT49	Human	PMID:17577209
Molecular Function	GO:0005515	protein binding	HINFP	IPI	UniProtKB:Q9UBU8	Human	PMID:17577209
Molecular Function	GO:0005515	protein binding	HINFP	IPI	UniProtKB:Q9UNY4	Human	PMID:17577209
Molecular Function	GO:0005515	protein binding	HINFP	IPI	UniProtKB:Q9UQ35	Human	PMID:17577209
Molecular Function	GO:0005515	protein binding	HINFP	IPI	UniProtKB:Q9WQX5	Human	PMID:17577209
Molecular Function	GO:0005515	protein binding	HINFP	IPI	UniProtKB:Q9Y520	Human	PMID:17577209
Molecular Function	GO:0005515	protein binding	HINFP	IPI	UniProtKB:Q14207	Human	PMID:18850719
Molecular Function	GO:0005515	protein binding	HINFP	IPI	UniProtKB:O14561	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	HINFP	IPI	UniProtKB:Q6PF18	Human	PMID:32296183
Molecular Function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Hinfp	IDA		Mouse	MGI:MGI:5605953|PMID:14752047
Molecular Function	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding	HINFP	IDA		Human	PMID:18850719
Molecular Function	GO:0000976	transcription cis-regulatory region binding	HINFP	IDA		Human	PMID:14752047
Molecular Function	GO:0000976	transcription cis-regulatory region binding	HINFP	IDA		Human	PMID:15541338
Molecular Function	GO:0000976	transcription cis-regulatory region binding	HINFP	IDA		Human	PMID:15988025
Molecular Function	GO:0000976	transcription cis-regulatory region binding	HINFP	IDA		Human	PMID:17974976
Cellular Component	GO:0015030	Cajal body	HINFP	IDA		Human	PMID:15988025
Cellular Component	GO:0005654	nucleoplasm	HINFP	IDA		Human	PMID:11553631
Cellular Component	GO:0005634	nucleus	HINFP	IDA		Human	PMID:14585971
Cellular Component	GO:0005634	nucleus	HINFP	IDA		Human	PMID:15988025
Cellular Component	GO:0005634	nucleus	HINFP	IDA		Human	PMID:18850719
Biological Process	GO:0000077	DNA damage checkpoint signaling	HINFP	IMP		Human	PMID:17974976
Biological Process	GO:0006281	DNA repair	HINFP	IMP		Human	PMID:17974976
Biological Process	GO:0006351	DNA-templated transcription	Hinfp	IMP		Mouse	MGI:MGI:3851835|PMID:19590016
Biological Process	GO:0045184	establishment of protein localization	HINFP	IMP		Human	PMID:15988025
Biological Process	GO:0000082	G1/S transition of mitotic cell cycle	HINFP	IMP		Human	PMID:14585971
Biological Process	GO:0001701	in utero embryonic development	Hinfp	IMP		Mouse	MGI:MGI:3851835|PMID:19590016
Biological Process	GO:0045445	myoblast differentiation	HINFP	IMP		Human	PMID:15541338
Biological Process	GO:0045892	negative regulation of DNA-templated transcription	HINFP	IDA		Human	PMID:11553631
Biological Process	GO:0045892	negative regulation of DNA-templated transcription	HINFP	IDA		Human	PMID:14752047
Biological Process	GO:0045892	negative regulation of DNA-templated transcription	HINFP	IDA		Human	PMID:15541338
Biological Process	GO:0045892	negative regulation of DNA-templated transcription	HINFP	IDA		Human	PMID:17163457
Biological Process	GO:0010629	negative regulation of gene expression	HINFP	IMP		Human	PMID:15541338
Biological Process	GO:0010629	negative regulation of gene expression	HINFP	IMP		Human	PMID:17974976
Biological Process	GO:0000122	negative regulation of transcription by RNA polymerase II	Hinfp	IDA		Mouse	MGI:MGI:5605953|PMID:14752047
Biological Process	GO:0045893	positive regulation of DNA-templated transcription	HINFP	IDA		Human	PMID:14585971
Biological Process	GO:0045893	positive regulation of DNA-templated transcription	HINFP	IDA		Human	PMID:17163457
Biological Process	GO:0045893	positive regulation of DNA-templated transcription	HINFP	IDA		Human	PMID:17974976
Biological Process	GO:0045893	positive regulation of DNA-templated transcription	Hinfp	IMP		Mouse	MGI:MGI:3851835|PMID:19590016
Biological Process	GO:0010628	positive regulation of gene expression	HINFP	IMP		Human	PMID:14585971
Biological Process	GO:0010628	positive regulation of gene expression	HINFP	IMP		Human	PMID:17974976
Biological Process	GO:0010628	positive regulation of gene expression	Hinfp	IMP		Mouse	MGI:MGI:3851835|PMID:19590016
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	HINFP	IMP		Human	PMID:18850719
Biological Process	GO:0006355	regulation of DNA-templated transcription	HINFP	IMP		Human	PMID:9540062
Biological Process	GO:0010468	regulation of gene expression	HINFP	IMP		Human	PMID:15988025
Biological Process	GO:0000083	regulation of transcription involved in G1/S transition of mitotic cell cycle	HINFP	IMP		Human	PMID:15988025

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern