Comparative GO Graph (mouse, human, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes HMCN2
  • Mouse genes Hmcn2
  • Rat genes
  • Zfish genes hmcn2
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Hmcn2

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Cellular Component	GO:0005604	basement membrane	Hmcn2	IDA		Mouse	PMID:17015624
Cellular Component	GO:0005938	cell cortex	Hmcn2	IDA		Mouse	PMID:17015624
Cellular Component	GO:0030054	cell junction	Hmcn2	IDA		Mouse	PMID:17015624
Cellular Component	GO:0062023	collagen-containing extracellular matrix	HMCN2	HDA		Human	PMID:27068509
Cellular Component	GO:0062023	collagen-containing extracellular matrix	Hmcn2	HDA		Mouse	MGI:MGI:6201834|PMID:22159717
Cellular Component	GO:0062023	collagen-containing extracellular matrix	Hmcn2	HDA		Mouse	MGI:MGI:6201853|PMID:28071719
Cellular Component	GO:0005576	extracellular region	Hmcn2	IDA		Mouse	PMID:17015624
Biological Process	GO:0035122	embryonic medial fin morphogenesis	hmcn2	IGI	ZFIN:ZDB-MRPHLNO-100528-8,ZFIN:ZDB-MRPHLNO-121030-1	Zfish	PMID:22771579
Biological Process	GO:0030198	extracellular matrix organization	hmcn2	IGI	ZFIN:ZDB-MRPHLNO-100528-8,ZFIN:ZDB-MRPHLNO-121030-1	Zfish	PMID:22771579
Biological Process	GO:0090497	mesenchymal cell migration	hmcn2	IGI	ZFIN:ZDB-MRPHLNO-100528-8,ZFIN:ZDB-MRPHLNO-121030-1	Zfish	PMID:22771579
Biological Process	GO:0043589	skin morphogenesis	hmcn2	IGI	ZFIN:ZDB-MRPHLNO-100528-8,ZFIN:ZDB-MRPHLNO-121030-1	Zfish	PMID:22771579

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern