Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes HMGN1
  • Mouse genes Hmgn1
  • Rat genes Hmgn1
  • Zfish genes hmgn6
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Hmgn1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003682	chromatin binding	Hmgn1	IDA		Mouse	PMID:12660172
Molecular Function	GO:0005515	protein binding	HMGN1	IPI	UniProtKB:C0HLU2	Human	PMID:33468658
Molecular Function	GO:0005515	protein binding	Hmgn1	IPI	PR:P11103	Mouse	PMID:22736760
Cellular Component	GO:0001674	female germ cell nucleus	Hmgn1	IDA		Mouse	PMID:11133167
Cellular Component	GO:0005654	nucleoplasm	HMGN1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005634	nucleus	HMGN1	HDA		Human	PMID:16780588
Cellular Component	GO:0005634	nucleus	Hmgn1	IDA		Mouse	PMID:16466397
Biological Process	GO:0006325	chromatin organization	Hmgn1	IMP	MGI:MGI:3590648	Mouse	PMID:12660172
Biological Process	GO:1901666	positive regulation of NAD+ ADP-ribosyltransferase activity	Hmgn1	IMP	MGI:MGI:3590648	Mouse	PMID:22736760
Biological Process	GO:0048597	post-embryonic camera-type eye morphogenesis	Hmgn1	IMP	MGI:MGI:3590648	Mouse	PMID:16466397
Biological Process	GO:0000720	pyrimidine dimer repair by nucleotide-excision repair	Hmgn1	IMP	MGI:MGI:3590648	Mouse	PMID:12660172
Biological Process	GO:0040034	regulation of development, heterochronic	Hmgn1	IGI	MGI:MGI:96136	Mouse	PMID:11133167
Biological Process	GO:0050678	regulation of epithelial cell proliferation	Hmgn1	IMP	MGI:MGI:3590648	Mouse	PMID:16466397
Biological Process	GO:0006357	regulation of transcription by RNA polymerase II	Hmgn1	IMP	MGI:MGI:3590648	Mouse	PMID:21278158
Biological Process	GO:0010224	response to UV-B	Hmgn1	IMP	MGI:MGI:3590648	Mouse	PMID:12660172
Biological Process	GO:0010225	response to UV-C	Hmgn1	IDA		Mouse	PMID:12660172
Biological Process	GO:0006283	transcription-coupled nucleotide-excision repair	Hmgn1	IMP	MGI:MGI:3590648	Mouse	PMID:12660172

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern