Comparative GO Graph (mouse, human, rat)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes HMGN5
  • Mouse genes Hmgn5
  • Rat genes Hmgn5,Hmgn5b
  • Zfish genes
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Hmgn5

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003682	chromatin binding	Hmgn5	IDA		Mouse	PMID:10692437
Molecular Function	GO:0003723	RNA binding	HMGN5	HDA		Human	PMID:22681889
Cellular Component	GO:0005739	mitochondrion	HMGN5	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005654	nucleoplasm	HMGN5	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005654	nucleoplasm	Hmgn5	IDA		Mouse	PMID:10692437
Cellular Component	GO:0005634	nucleus	Hmgn5	IDA		Mouse	PMID:24392144
Biological Process	GO:0006325	chromatin organization	Hmgn5	IMP	MGI:MGI:5588022	Mouse	PMID:24392144
Biological Process	GO:0006749	glutathione metabolic process	Hmgn5	IMP	MGI:MGI:5588022	Mouse	PMID:24392144
Biological Process	GO:0043066	negative regulation of apoptotic process	HMGN5	IMP		Human	PMID:20531280
Biological Process	GO:0008284	positive regulation of cell population proliferation	HMGN5	IMP		Human	PMID:20531280
Biological Process	GO:0010628	positive regulation of gene expression	HMGN5	IMP		Human	PMID:20531280
Biological Process	GO:0006357	regulation of transcription by RNA polymerase II	Hmgn5	IDA		Mouse	PMID:10692437
Biological Process	GO:0006357	regulation of transcription by RNA polymerase II	Hmgn5	IMP	MGI:MGI:5317454	Mouse	PMID:21278158

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern