Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes HMMR
  • Mouse genes Hmmr
  • Rat genes Hmmr
  • Zfish genes hmmr
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Hmmr

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0038024	cargo receptor activity	Hmmr	IDA		Mouse	PMID:26528478
Molecular Function	GO:0038024	cargo receptor activity	Hmmr	IMP		Mouse	PMID:26528478
Molecular Function	GO:0005515	protein binding	HMMR	IPI	UniProtKB:P38398	Human	PMID:22110403
Molecular Function	GO:0005515	protein binding	HMMR	IPI	UniProtKB:Q9ULW0	Human	PMID:22110403
Molecular Function	GO:0005515	protein binding	HMMR	IPI	UniProtKB:Q9UPS8	Human	PMID:22666460
Molecular Function	GO:0005515	protein binding	HMMR	IPI	UniProtKB:P63167	Human	PMID:22965910
Molecular Function	GO:0005515	protein binding	HMMR	IPI	UniProtKB:Q9H4H8	Human	PMID:22965910
Molecular Function	GO:0005515	protein binding	HMMR	IPI	UniProtKB:Q8NDC4	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	HMMR	IPI	UniProtKB:Q8NDC4	Human	PMID:31515488
Cellular Component	GO:0005813	centrosome	HMMR	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005829	cytosol	HMMR	IDA		Human	GO_REF:0000052
Cellular Component	GO:0016020	membrane	HMMR	HDA		Human	PMID:19946888
Cellular Component	GO:0015630	microtubule cytoskeleton	HMMR	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005819	spindle	HMMR	IDA		Human	PMID:31338967
Biological Process	GO:0061026	cardiac muscle tissue regeneration	hmmr	IMP	ZFIN:ZDB-MRPHLNO-160107-1	Zfish	PMID:26156497
Biological Process	GO:0006897	endocytosis	Hmmr	IMP		Mouse	MGI:MGI:7264268|PMID:26528478
Biological Process	GO:0030214	hyaluronan catabolic process	Hmmr	IMP		Mouse	PMID:26528478
Biological Process	GO:0030214	hyaluronan catabolic process	Hmmr	IDA		Mouse	PMID:26528478
Biological Process	GO:0006898	receptor-mediated endocytosis	Hmmr	IDA		Mouse	PMID:26528478
Biological Process	GO:0006898	receptor-mediated endocytosis	Hmmr	IMP		Mouse	PMID:26528478

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern