Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes HNRNPD
  • Mouse genes Hnrnpd
  • Rat genes Hnrnpd
  • Zfish genes hnrnpd
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Hnrnpd

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003682	chromatin binding	Hnrnpd	IDA		Rat	PMID:18413351|RGD:10041067
Molecular Function	GO:0042826	histone deacetylase binding	Hnrnpd	IPI	RGD:1309799	Rat	PMID:18413351|RGD:10041067
Molecular Function	GO:0003680	minor groove of adenine-thymine-rich DNA binding	Hnrnpd	IDA		Rat	PMID:18413351|RGD:10041067
Molecular Function	GO:0035925	mRNA 3'-UTR AU-rich region binding	Hnrnpd	IDA		Rat	PMID:16113063|RGD:10042966
Molecular Function	GO:0003730	mRNA 3'-UTR binding	hnrnpd	IDA		Zfish	PMID:31227602
Molecular Function	GO:0003729	mRNA binding	Hnrnpd	IDA		Rat	PMID:18583400|RGD:10041065
Molecular Function	GO:0005515	protein binding	HNRNPD	IPI	UniProtKB:Q9BYZ2	Human	PMID:12107167
Molecular Function	GO:0005515	protein binding	HNRNPD	IPI	UniProtKB:Q00839	Human	PMID:22365833
Molecular Function	GO:0005515	protein binding	HNRNPD	IPI	UniProtKB:Q9UNL4	Human	PMID:23603392
Molecular Function	GO:0005515	protein binding	HNRNPD	IPI	UniProtKB:P23396	Human	PMID:24423872
Molecular Function	GO:0005515	protein binding	HNRNPD	IPI	UniProtKB:P55884	Human	PMID:24423872
Molecular Function	GO:0005515	protein binding	HNRNPD	IPI	UniProtKB:Q04637	Human	PMID:24423872
Molecular Function	GO:0005515	protein binding	HNRNPD	IPI	UniProtKB:P22626	Human	PMID:26496610
Molecular Function	GO:0005515	protein binding	HNRNPD	IPI	UniProtKB:Q00839	Human	PMID:26496610
Molecular Function	GO:0005515	protein binding	HNRNPD	IPI	UniProtKB:P22626	Human	PMID:30021884
Molecular Function	GO:0005515	protein binding	HNRNPD	IPI	UniProtKB:Q00839	Human	PMID:30021884
Molecular Function	GO:0005515	protein binding	Hnrnpd	IPI	UniProtKB:P06151	Mouse	MGI:MGI:3693398|PMID:12107167
Molecular Function	GO:0005515	protein binding	Hnrnpd	IPI	RGD:71058	Rat	PMID:16518874|RGD:10054427
Molecular Function	GO:0003723	RNA binding	HNRNPD	HDA		Human	PMID:22658674
Molecular Function	GO:0003723	RNA binding	HNRNPD	HDA		Human	PMID:22681889
Molecular Function	GO:0003723	RNA binding	HNRNPD	IDA		Human	PMID:8321232
Molecular Function	GO:0042162	telomeric DNA binding	HNRNPD	IDA		Human	PMID:8321232
Cellular Component	GO:0005829	cytosol	HNRNPD	IDA		Human	PMID:11051545
Cellular Component	GO:0005829	cytosol	Hnrnpd	IDA		Rat	PMID:15192077|RGD:1357938
Cellular Component	GO:0098978	glutamatergic synapse	Hnrnpd	EXP		Rat	PMID:22238095|RGD:155230714
Cellular Component	GO:0098978	glutamatergic synapse	Hnrnpd	IDA		Rat	PMID:22238095|RGD:155230714
Cellular Component	GO:0106002	mCRD-mediated mRNA stability complex	HNRNPD	IPI		Human	PMID:11051545
Cellular Component	GO:0005654	nucleoplasm	HNRNPD	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005634	nucleus	Hnrnpd	IDA		Rat	PMID:7503735|RGD:10040980
Cellular Component	GO:0014069	postsynaptic density	Hnrnpd	EXP		Rat	PMID:22238095|RGD:155230714
Cellular Component	GO:0014069	postsynaptic density	Hnrnpd	IDA		Rat	PMID:22238095|RGD:155230714
Cellular Component	GO:1990904	ribonucleoprotein complex	HNRNPD	IDA		Human	PMID:17289661
Cellular Component	GO:0045202	synapse	Hnrnpd	IDA		Mouse	PMID:16452087
Cellular Component	GO:0045202	synapse	Hnrnpd	EXP		Mouse	PMID:16452087
Biological Process	GO:0061158	3'-UTR-mediated mRNA destabilization	Hnrnpd	IMP		Rat	PMID:20805360|RGD:10042974
Biological Process	GO:0007420	brain development	Hnrnpd	IEP		Rat	PMID:18413351|RGD:10041067
Biological Process	GO:0071230	cellular response to amino acid stimulus	Hnrnpd	IEP		Rat	PMID:16569663|RGD:10042967
Biological Process	GO:0071392	cellular response to estradiol stimulus	Hnrnpd	IEP		Rat	PMID:22216273|RGD:10042978
Biological Process	GO:0071732	cellular response to nitric oxide	Hnrnpd	IDA		Rat	PMID:16683234|RGD:10042976
Biological Process	GO:1904586	cellular response to putrescine	Hnrnpd	IDA		Rat	PMID:20805360|RGD:10042974
Biological Process	GO:0021549	cerebellum development	Hnrnpd	IEP		Rat	PMID:19115409|RGD:10041070
Biological Process	GO:0097167	circadian regulation of translation	HNRNPD	IMP		Human	PMID:24423872
Biological Process	GO:0070934	CRD-mediated mRNA stabilization	HNRNPD	IDA		Human	PMID:11051545
Biological Process	GO:1990828	hepatocyte dedifferentiation	Hnrnpd	IEP		Rat	PMID:20102719|RGD:10042969
Biological Process	GO:0001889	liver development	Hnrnpd	IEP		Rat	PMID:20102719|RGD:10042969
Biological Process	GO:0048255	mRNA stabilization	Hnrnpd	IDA		Rat	PMID:15192077|RGD:1357938
Biological Process	GO:0042789	mRNA transcription by RNA polymerase II	Hnrnpd	IMP		Mouse	MGI:MGI:5438900|PMID:22633954
Biological Process	GO:0010629	negative regulation of gene expression	Hnrnpd	IMP		Rat	PMID:16683234|RGD:10042976
Biological Process	GO:1900152	negative regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay	HNRNPD	IDA		Human	PMID:11051545
Biological Process	GO:2000767	positive regulation of cytoplasmic translation	HNRNPD	IDA		Human	PMID:11051545
Biological Process	GO:0010628	positive regulation of gene expression	Hnrnpd	IMP		Rat	PMID:20102719|RGD:10042969
Biological Process	GO:1905663	positive regulation of telomerase RNA reverse transcriptase activity	Hnrnpd	IMP		Mouse	MGI:MGI:5438900|PMID:22633954
Biological Process	GO:1904355	positive regulation of telomere capping	Hnrnpd	IMP		Mouse	MGI:MGI:5438900|PMID:22633954
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	Hnrnpd	IMP		Mouse	MGI:MGI:5438900|PMID:22633954
Biological Process	GO:0045727	positive regulation of translation	HNRNPD	IMP		Human	PMID:24423872
Biological Process	GO:0042752	regulation of circadian rhythm	HNRNPD	IMP		Human	PMID:24423872
Biological Process	GO:0043488	regulation of mRNA stability	Hnrnpd	IMP		Mouse	PMID:14976220
Biological Process	GO:0032204	regulation of telomere maintenance	Hnrnpd	IMP		Mouse	MGI:MGI:5438900|PMID:22633954
Biological Process	GO:0051592	response to calcium ion	Hnrnpd	IDA		Rat	PMID:18583400|RGD:10041065
Biological Process	GO:0051602	response to electrical stimulus	Hnrnpd	IEP		Rat	PMID:20375275|RGD:10040990
Biological Process	GO:0032355	response to estradiol	Hnrnpd	IEP		Rat	PMID:11742537|RGD:1357937
Biological Process	GO:1901355	response to rapamycin	Hnrnpd	IDA		Rat	PMID:17603996|RGD:10042981
Biological Process	GO:1904383	response to sodium phosphate	Hnrnpd	IDA		Rat	PMID:18583400|RGD:10041065
Biological Process	GO:0009410	response to xenobiotic stimulus	Hnrnpd	IEP		Rat	PMID:16636684|RGD:10042975

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern