Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes HOXB1
  • Mouse genes Hoxb1
  • Rat genes Hoxb1
  • Zfish genes hoxb1a,hoxb1b
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Hoxb1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003677	DNA binding	HOXB1	IDA		Human	PMID:10052460
Molecular Function	GO:0003677	DNA binding	Hoxb1	IDA		Mouse	PMID:7911971
Molecular Function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific	HOXB1	IDA		Human	PMID:9556594
Molecular Function	GO:0019904	protein domain specific binding	HOXB1	IPI	UniProtKB:P40424	Human	PMID:10052460
Molecular Function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	HOXB1	IDA		Human	PMID:9556594
Molecular Function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Hoxb1	IDA		Mouse	PMID:9242495
Molecular Function	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding	HOXB1	IDA		Human	PMID:9556594
Molecular Function	GO:0043565	sequence-specific DNA binding	Hoxb1	IGI	MGI:MGI:97495	Mouse	PMID:18787068
Molecular Function	GO:0043565	sequence-specific DNA binding	hoxb1b	IDA		Zfish	PMID:24480644
Molecular Function	GO:0043565	sequence-specific DNA binding	hoxb1a	IDA		Zfish	PMID:24480644
Molecular Function	GO:0043565	sequence-specific DNA binding	hoxb1a	IDA		Zfish	PMID:18787068
Molecular Function	GO:1990837	sequence-specific double-stranded DNA binding	HOXB1	IDA		Human	PMID:28473536
Cellular Component	GO:0005654	nucleoplasm	HOXB1	IDA		Human	GO_REF:0000052
Biological Process	GO:0048646	anatomical structure formation involved in morphogenesis	Hoxb1	IGI	MGI:MGI:96170	Mouse	PMID:10529420
Biological Process	GO:0009653	anatomical structure morphogenesis	Hoxb1	IGI	MGI:MGI:96170	Mouse	PMID:10529420
Biological Process	GO:0009952	anterior/posterior pattern specification	Hoxb1	IGI	MGI:MGI:96185	Mouse	PMID:10885747
Biological Process	GO:0009952	anterior/posterior pattern specification	Hoxb1	IGI	MGI:MGI:96190	Mouse	PMID:10885747
Biological Process	GO:0009952	anterior/posterior pattern specification	Hoxb1	IGI	MGI:MGI:96186	Mouse	PMID:10885747
Biological Process	GO:0009952	anterior/posterior pattern specification	Hoxb1	IGI	MGI:MGI:96187	Mouse	PMID:10885747
Biological Process	GO:0009952	anterior/posterior pattern specification	Hoxb1	IGI	MGI:MGI:96183	Mouse	PMID:10885747
Biological Process	GO:0009952	anterior/posterior pattern specification	Hoxb1	IGI	MGI:MGI:96170	Mouse	PMID:10529420
Biological Process	GO:0009952	anterior/posterior pattern specification	Hoxb1	IGI	MGI:MGI:96189	Mouse	PMID:10885747
Biological Process	GO:0009952	anterior/posterior pattern specification	Hoxb1	IGI	MGI:MGI:96188	Mouse	PMID:10885747
Biological Process	GO:0009952	anterior/posterior pattern specification	Hoxb1	IGI	MGI:MGI:96184	Mouse	PMID:10885747
Biological Process	GO:0021535	cell migration in hindbrain	hoxb1a	IMP	ZFIN:ZDB-GENO-140917-13	Zfish	PMID:24902847
Biological Process	GO:0048704	embryonic skeletal system morphogenesis	Hoxb1	IGI	MGI:MGI:96183	Mouse	PMID:10885747
Biological Process	GO:0048704	embryonic skeletal system morphogenesis	Hoxb1	IGI	MGI:MGI:96190	Mouse	PMID:10885747
Biological Process	GO:0048704	embryonic skeletal system morphogenesis	Hoxb1	IGI	MGI:MGI:96187	Mouse	PMID:10885747
Biological Process	GO:0048704	embryonic skeletal system morphogenesis	Hoxb1	IGI	MGI:MGI:96184	Mouse	PMID:10885747
Biological Process	GO:0048704	embryonic skeletal system morphogenesis	Hoxb1	IGI	MGI:MGI:96189	Mouse	PMID:10885747
Biological Process	GO:0048704	embryonic skeletal system morphogenesis	Hoxb1	IGI	MGI:MGI:96188	Mouse	PMID:10885747
Biological Process	GO:0048704	embryonic skeletal system morphogenesis	Hoxb1	IGI	MGI:MGI:96185	Mouse	PMID:10885747
Biological Process	GO:0048704	embryonic skeletal system morphogenesis	Hoxb1	IGI	MGI:MGI:96186	Mouse	PMID:10885747
Biological Process	GO:0000132	establishment of mitotic spindle orientation	hoxb1b	IMP	ZFIN:ZDB-GENO-140513-5	Zfish	PMID:24449840
Biological Process	GO:0021561	facial nerve development	hoxb1a	IMP	ZFIN:ZDB-GENO-181220-4	Zfish	PMID:29496480
Biological Process	GO:0021561	facial nerve development	hoxb1a	IMP	ZFIN:ZDB-MRPHLNO-050825-1	Zfish	PMID:11973267
Biological Process	GO:0021612	facial nerve structural organization	Hoxb1	IMP	MGI:MGI:1857824	Mouse	PMID:8898234
Biological Process	GO:0021754	facial nucleus development	Hoxb1	IMP	MGI:MGI:1857824	Mouse	PMID:8898234
Biological Process	GO:0021754	facial nucleus development	hoxb1a	IMP	ZFIN:ZDB-GENO-140917-13	Zfish	PMID:24902847
Biological Process	GO:0021592	fourth ventricle development	hoxb1b	IMP	ZFIN:ZDB-GENO-140513-5	Zfish	PMID:24449840
Biological Process	GO:0030902	hindbrain development	hoxb1b	IMP	ZFIN:ZDB-GENO-181220-5	Zfish	PMID:29496480
Biological Process	GO:0030902	hindbrain development	hoxb1b	IMP		Zfish	PMID:15044546
Biological Process	GO:0030902	hindbrain development	hoxb1b	IMP	ZFIN:ZDB-GENO-140917-10	Zfish	PMID:24902847
Biological Process	GO:0030902	hindbrain development	hoxb1b	IMP	ZFIN:ZDB-MRPHLNO-050825-2	Zfish	PMID:11973267
Biological Process	GO:0021578	hindbrain maturation	hoxb1a	IMP	ZFIN:ZDB-GENO-140917-13	Zfish	PMID:24902847
Biological Process	GO:0021575	hindbrain morphogenesis	hoxb1b	IMP	ZFIN:ZDB-GENO-130621-1	Zfish	PMID:23299976
Biological Process	GO:0014025	neural keel formation	hoxb1b	IMP	ZFIN:ZDB-GENO-140513-5	Zfish	PMID:24449840
Biological Process	GO:0034728	nucleosome organization	hoxb1b	IDA		Zfish	PMID:24902847
Biological Process	GO:0071599	otic vesicle development	hoxb1b	IMP	ZFIN:ZDB-GENO-130621-1	Zfish	PMID:23299976
Biological Process	GO:0035066	positive regulation of histone acetylation	hoxb1b	IGI	ZFIN:ZDB-GENE-000201-18,ZFIN:ZDB-GENE-020122-5	Zfish	PMID:24480644
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	HOXB1	IDA		Human	PMID:9556594
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	Hoxb1	IDA		Mouse	PMID:18787068
Biological Process	GO:0031060	regulation of histone methylation	hoxb1b	IGI	ZFIN:ZDB-GENE-000201-18,ZFIN:ZDB-GENE-020122-5	Zfish	PMID:24480644
Biological Process	GO:0021570	rhombomere 4 development	Hoxb1	IGI	MGI:MGI:96170	Mouse	PMID:10529420
Biological Process	GO:0021570	rhombomere 4 development	hoxb1a	IMP	ZFIN:ZDB-GENO-181220-4	Zfish	PMID:29496480
Biological Process	GO:0021570	rhombomere 4 development	hoxb1b	IMP	ZFIN:ZDB-GENO-140917-10	Zfish	PMID:29945667
Biological Process	GO:0021570	rhombomere 4 development	hoxb1a	IDA		Zfish	PMID:17651720
Biological Process	GO:0021570	rhombomere 4 development	hoxb1a	IMP	ZFIN:ZDB-MRPHLNO-050825-1	Zfish	PMID:17651720
Biological Process	GO:0021663	rhombomere 4 formation	hoxb1b	IMP	ZFIN:ZDB-GENO-140917-10	Zfish	PMID:24902847
Biological Process	GO:0021661	rhombomere 4 morphogenesis	hoxb1a	IMP	ZFIN:ZDB-GENO-140917-13	Zfish	PMID:24902847
Biological Process	GO:0021571	rhombomere 5 development	Hoxb1	IGI	MGI:MGI:96170	Mouse	PMID:10529420
Biological Process	GO:0021546	rhombomere development	Hoxb1	IDA		Mouse	PMID:21320481
Biological Process	GO:0021593	rhombomere morphogenesis	hoxb1b	IMP	ZFIN:ZDB-GENO-140917-10	Zfish	PMID:24902847

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern