Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes HOXD12
  • Mouse genes Hoxd12
  • Rat genes Hoxd12
  • Zfish genes hoxd12a
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Hoxd12

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	HOXD12	IPI	UniProtKB:Q13077	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	Hoxd12	IPI	PR:Q60954	Mouse	PMID:9343407
Molecular Function	GO:1990837	sequence-specific double-stranded DNA binding	HOXD12	IDA		Human	PMID:28473536
Cellular Component	GO:0005667	transcription regulator complex	Hoxd12	IDA		Mouse	PMID:9343407
Biological Process	GO:0042733	embryonic digit morphogenesis	Hoxd12	IGI	MGI:MGI:96205	Mouse	PMID:17714700
Biological Process	GO:0042733	embryonic digit morphogenesis	Hoxd12	IGI	MGI:MGI:95729	Mouse	PMID:17714700
Biological Process	GO:0042733	embryonic digit morphogenesis	Hoxd12	IGI	MGI:MGI:96203	Mouse	PMID:8900279
Biological Process	GO:0042733	embryonic digit morphogenesis	Hoxd12	IGI	MGI:MGI:96203	Mouse	PMID:17714700
Biological Process	GO:0042733	embryonic digit morphogenesis	Hoxd12	IGI	MGI:MGI:96205	Mouse	PMID:8900279
Biological Process	GO:0007389	pattern specification process	Hoxd12	IGI	MGI:MGI:96205	Mouse	PMID:8900279
Biological Process	GO:0007389	pattern specification process	Hoxd12	IGI	MGI:MGI:96203	Mouse	PMID:8900279
Biological Process	GO:0001501	skeletal system development	Hoxd12	IMP	MGI:MGI:1857964	Mouse	PMID:8620844

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern