Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes HOXD9
  • Mouse genes Hoxd9
  • Rat genes Hoxd9
  • Zfish genes hoxd9a
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Hoxd9

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003677	DNA binding	Hoxd9	IDA		Mouse	PMID:1756725
Molecular Function	GO:0003700	DNA-binding transcription factor activity	Hoxd9	IDA		Mouse	PMID:1756725
Molecular Function	GO:0001227	DNA-binding transcription repressor activity, RNA polymerase II-specific	HOXD9	IDA		Human	PMID:1756725
Molecular Function	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding	HOXD9	IDA		Human	PMID:1756725
Molecular Function	GO:1990837	sequence-specific double-stranded DNA binding	HOXD9	IDA		Human	PMID:28473536
Cellular Component	GO:0005730	nucleolus	HOXD9	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005654	nucleoplasm	HOXD9	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005634	nucleus	Hoxd9	IDA		Mouse	PMID:2568311
Biological Process	GO:0008344	adult locomotory behavior	Hoxd9	IGI	MGI:MGI:96202	Mouse	PMID:10642795
Biological Process	GO:0009952	anterior/posterior pattern specification	Hoxd9	IGI	MGI:MGI:96199	Mouse	PMID:17626057
Biological Process	GO:0009952	anterior/posterior pattern specification	Hoxd9	IMP	MGI:MGI:2150414	Mouse	PMID:8625797
Biological Process	GO:0009952	anterior/posterior pattern specification	Hoxd9	IGI	MGI:MGI:96190	Mouse	PMID:17626057
Biological Process	GO:0009952	anterior/posterior pattern specification	Hoxd9	IGI	MGI:MGI:96180	Mouse	PMID:17626057
Biological Process	GO:0009952	anterior/posterior pattern specification	Hoxd9	IGI	MGI:MGI:96180	Mouse	PMID:8625797
Biological Process	GO:0009952	anterior/posterior pattern specification	Hoxd9	IGI	MGI:MGI:96202	Mouse	PMID:10642795
Biological Process	GO:0035115	embryonic forelimb morphogenesis	Hoxd9	IGI	MGI:MGI:96180	Mouse	PMID:8625797
Biological Process	GO:0035115	embryonic forelimb morphogenesis	Hoxd9	IMP	MGI:MGI:2150414	Mouse	PMID:8625797
Biological Process	GO:0048706	embryonic skeletal system development	Hoxd9	IGI	MGI:MGI:96180	Mouse	PMID:17626057
Biological Process	GO:0048706	embryonic skeletal system development	Hoxd9	IMP	MGI:MGI:2150414	Mouse	PMID:8625797
Biological Process	GO:0048706	embryonic skeletal system development	Hoxd9	IGI	MGI:MGI:96180	Mouse	PMID:8625797
Biological Process	GO:0048706	embryonic skeletal system development	Hoxd9	IGI	MGI:MGI:96190	Mouse	PMID:17626057
Biological Process	GO:0048706	embryonic skeletal system development	Hoxd9	IGI	MGI:MGI:96199	Mouse	PMID:17626057
Biological Process	GO:0048704	embryonic skeletal system morphogenesis	Hoxd9	IGI	MGI:MGI:96202	Mouse	PMID:10642795
Biological Process	GO:0035136	forelimb morphogenesis	Hoxd9	IGI	MGI:MGI:96202	Mouse	PMID:10642795
Biological Process	GO:0035137	hindlimb morphogenesis	Hoxd9	IGI	MGI:MGI:96202	Mouse	PMID:10642795
Biological Process	GO:0030879	mammary gland development	Hoxd9	IGI	MGI:MGI:96180	Mouse	PMID:9892669
Biological Process	GO:0030879	mammary gland development	Hoxd9	IGI	MGI:MGI:96190	Mouse	PMID:9892669
Biological Process	GO:0000122	negative regulation of transcription by RNA polymerase II	HOXD9	IDA		Human	PMID:1756725
Biological Process	GO:0048935	peripheral nervous system neuron development	Hoxd9	IGI	MGI:MGI:96202	Mouse	PMID:10642795
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	Hoxd9	IDA		Mouse	PMID:1756725
Biological Process	GO:0009954	proximal/distal pattern formation	Hoxd9	IMP	MGI:MGI:2150414	Mouse	PMID:8625797
Biological Process	GO:0009954	proximal/distal pattern formation	Hoxd9	IGI	MGI:MGI:96180	Mouse	PMID:8625797
Biological Process	GO:0010468	regulation of gene expression	Hoxd9	IGI	MGI:MGI:96202	Mouse	PMID:23760953
Biological Process	GO:0010468	regulation of gene expression	Hoxd9	IGI	MGI:MGI:96203	Mouse	PMID:23760953
Biological Process	GO:0007338	single fertilization	Hoxd9	IGI	MGI:MGI:96202	Mouse	PMID:23760953
Biological Process	GO:0007338	single fertilization	Hoxd9	IGI	MGI:MGI:96203	Mouse	PMID:23760953
Biological Process	GO:0007519	skeletal muscle tissue development	Hoxd9	IGI	MGI:MGI:96202	Mouse	PMID:10642795

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern