Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes HP1BP3
  • Mouse genes Hp1bp3
  • Rat genes Hp1bp3
  • Zfish genes hp1bp3
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Hp1bp3

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003677	DNA binding	HP1BP3	IDA		Human	PMID:20042602
Molecular Function	GO:0031491	nucleosome binding	HP1BP3	IDA		Human	PMID:20042602
Molecular Function	GO:0005515	protein binding	HP1BP3	IPI	UniProtKB:P45973	Human	PMID:20042602
Molecular Function	GO:0005515	protein binding	HP1BP3	IPI	UniProtKB:P50222	Human	PMID:25416956
Cellular Component	GO:0005694	chromosome	HP1BP3	IDA		Human	PMID:20042602
Cellular Component	GO:0005694	chromosome	HP1BP3	IDA		Human	PMID:24830416
Cellular Component	GO:0016607	nuclear speck	HP1BP3	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005634	nucleus	HP1BP3	IDA		Human	PMID:24830416
Biological Process	GO:0071456	cellular response to hypoxia	HP1BP3	IDA		Human	PMID:25100860
Biological Process	GO:0070828	heterochromatin organization	HP1BP3	IMP		Human	PMID:24830416
Biological Process	GO:0042127	regulation of cell population proliferation	HP1BP3	IMP		Human	PMID:24830416
Biological Process	GO:0006355	regulation of DNA-templated transcription	HP1BP3	IMP		Human	PMID:24830416
Biological Process	GO:0097298	regulation of nucleus size	HP1BP3	IMP		Human	PMID:24830416

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern